NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326759_00128

Scaffold Ga0326759_00128


Overview

Basic Information
Taxon OID3300033781 Open in IMG/M
Scaffold IDGa0326759_00128 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.JH_P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18349
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (64.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.6903Long. (o)-110.7293Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008606Metagenome / Metatranscriptome330Y
F039967Metagenome162N

Sequences

Protein IDFamilyRBSSequence
Ga0326759_00128_4073_4339F008606GGAGGVAEARDPEDPDSRSYDKLVELSEQVNELRGQVVSLAERVTRLEEENRWLRQELAEIKGAVTDIRRNVWMILASTITVLVTVIIGLIVH
Ga0326759_00128_8332_8595F039967GGAGGMIASIGVGVGLLVPYGAIEKVTVPEGLKLSQDIMASAVTVLLGLTVFGTSVRNMLQPPYGGTWAWLNTSTSLNMSVGAFITIRDKAD

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