Scaffold Ga0373126_021

Overview

Basic Information

• Taxon OID: 3300033749
• Scaffold ID: Ga0373126_021
• Source Dataset Name: Fracking water microbial communities from gas well in Marcellus Shale, West Virginia, United States - MIP3H_01182017
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Ohio State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12650
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Fracking Water → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009252	Metagenome	320	Y
F017447	Metagenome / Metatranscriptome	240	Y
F021250	Metagenome	219	N
F033698	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0373126_021_7202_7468	F017447	GAG	MFNRVAPKISRGIGQVADVGRNIGQVVKHSRNIGSIVNQISGGRLSQSPIGQKIQDVANKIENGANFIAGNENKAQQALSTISRKFNA
Ga0373126_021_7556_8461	F009252	N/A	MDKINIYINSKNRDLNESISNFTVRIPQNLLRLEQGEHFSLNVNGFYCYNSWFNCIDGFNNEFHIIIKNIDNEVIETYIYKLNDGNPNVNDVKSNLNNLLLNKVNITYDKQRNKFMFKRTLPVSTQQYKMYLKIINSEDFLGFYKSDRDIEILLPYLQNVFSNNIINILGDEAIIIKINGDCILAGNTVDNFGTETYEPSNIIFMKPIDVPSNGLLKYNNEDGGDSFHYRLANVEQITWFTLTIHNQDNELIPNFSDYILLLQFIRHKTEEGKVEILLNSLLDYVKQIYLMISHFLFPAM
Ga0373126_021_8467_9192	F033698	N/A	MKFFRYKQVARLTFMGIDDEYNNVASSYYNTKLKLFNNTEINTKLLRFRINNLHNIKLSRNAKLILESVYLPCVFDNNLDVKHDTNIVLRLKNISGSNCFNSSNDNDSSPIIFSHSVQSRPEPIVRTLTTTLAGAISTYTNQSTNINYYDTGISFFNPSPDKLYNFTIPNTFTNNTVFEFEITYEMNAGDNIVLADDNELFYKFQCSLIICDVDEEELISNDSNTVDYNKFKPHFPLKKS
Ga0373126_021_9479_10372	F021250	N/A	MIIEENLLGWNNTPVKSKEVVYPQSKDDKAPKNYFLGIFCGSRGSGKSYLFTKLLKTLEEKKAYLDDKLIPQRIILISSTANSDSNIIFKSLKNLDWDNDVIENYEDDLLKIKMEDLKYDLDHSKDYKLYKEAWNNFVKCKTIDDLNEDELKILYNYDFIPFKKFPKPKYPDGFLIHWIIDDMLGTNIFKNGRSTFTNLCIRNRHIIPGNIIIAIQSIMSVPKTIRLNANLLALFKFADSETVLEDVYPLFSAFVKEEQFKELYEYATKEPFNALVIDATRGKPIFKKNFDKVLNIS