3300033749: Fracking water microbial communities from gas well in Marcellus Shale, West Virginia, United States - MIP3H_01182017

Overview

Basic Information

• IMG/M Taxon OID: 3300033749
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0397576 | Ga0373126
• Sample Name: Fracking water microbial communities from gas well in Marcellus Shale, West Virginia, United States - MIP3H_01182017
• Sequencing Status: Permanent Draft
• Sequencing Center: Ohio State University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1553566
• Sequencing Scaffolds: 1
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Fracking Water → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → gas well → fracking liquid
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Alt. (m): N/A
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009252	Metagenome	320	Y
F017447	Metagenome / Metatranscriptome	240	Y
F021250	Metagenome	219	N
F033698	Metagenome / Metatranscriptome	176	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0373126_021	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	12650

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0373126_021	Ga0373126_021_7202_7468	F017447	MFNRVAPKISRGIGQVADVGRNIGQVVKHSRNIGSIVNQISGGRLSQSPIGQKIQDVANKIENGANFIAGNENKAQQALSTISRKFNA
Ga0373126_021	Ga0373126_021_7556_8461	F009252	MDKINIYINSKNRDLNESISNFTVRIPQNLLRLEQGEHFSLNVNGFYCYNSWFNCIDGFNNEFHIIIKNIDNEVIETYIYKLNDGNPNVNDVKSNLNNLLLNKVNITYDKQRNKFMFKRTLPVSTQQYKMYLKIINSEDFLGFYKSDRDIEILLPYLQNVFSNNIINILGDEAIIIKINGDCILAGNTVDNFGTETYEPSNIIFMKPIDVPSNGLLKYNNEDGGDSFHYRLANVEQITWFTLTIHNQDNELIPNFSDYILLLQFIRHKTEEGKVEILLNSLLDYVKQIYLMISHFLFPAM
Ga0373126_021	Ga0373126_021_8467_9192	F033698	MKFFRYKQVARLTFMGIDDEYNNVASSYYNTKLKLFNNTEINTKLLRFRINNLHNIKLSRNAKLILESVYLPCVFDNNLDVKHDTNIVLRLKNISGSNCFNSSNDNDSSPIIFSHSVQSRPEPIVRTLTTTLAGAISTYTNQSTNINYYDTGISFFNPSPDKLYNFTIPNTFTNNTVFEFEITYEMNAGDNIVLADDNELFYKFQCSLIICDVDEEELISNDSNTVDYNKFKPHFPLKKS
Ga0373126_021	Ga0373126_021_9479_10372	F021250	MIIEENLLGWNNTPVKSKEVVYPQSKDDKAPKNYFLGIFCGSRGSGKSYLFTKLLKTLEEKKAYLDDKLIPQRIILISSTANSDSNIIFKSLKNLDWDNDVIENYEDDLLKIKMEDLKYDLDHSKDYKLYKEAWNNFVKCKTIDDLNEDELKILYNYDFIPFKKFPKPKYPDGFLIHWIIDDMLGTNIFKNGRSTFTNLCIRNRHIIPGNIIIAIQSIMSVPKTIRLNANLLALFKFADSETVLEDVYPLFSAFVKEEQFKELYEYATKEPFNALVIDATRGKPIFKKNFDKVLNIS