Scaffold Ga0314858_091187

Overview

Basic Information

• Taxon OID: 3300033742
• Scaffold ID: Ga0314858_091187
• Source Dataset Name: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 769
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.2943
  • Long. (^o): -156.7153
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015532	Metagenome / Metatranscriptome	254	Y
F046006	Metagenome	152	N
F053545	Metagenome	141	Y
F090883	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314858_091187_218_391	F090883	GGAGG	MVSIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGKVH
Ga0314858_091187_22_189	F053545	N/A	MDCPMCEEIITHMNQRISTHNGYVMLPIEDTRKNIEGGRESKIKWSGETLPEVGK
Ga0314858_091187_354_569	F046006	GGAGG	MKEYLKPLAKYINFIWLLVIIHFCITVIVVNFRYLDRLNNTIDTMWHEIEQVKDTNIKLYQFIEEHDNDFK
Ga0314858_091187_556_768	F015532	AGGAG	MILNKEDTIVRAKIPDRMMSTTFTLPIDDRKVVGIVNYTADTNGVTPLAFWVKIKPTDSYLDRELRASGKL