Basic Information | |
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Family ID | F090883 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 108 |
Average Sequence Length | 56 residues |
Representative Sequence | MVTIAGKMKRINNCRDMLTKATCPRMQAMWKRNYEKLLKKYWEEQGERILRAAGKIH |
Number of Associated Samples | 71 |
Number of Associated Scaffolds | 108 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 82.24 % |
% of genes near scaffold ends (potentially truncated) | 29.63 % |
% of genes from short scaffolds (< 2000 bps) | 78.70 % |
Associated GOLD sequencing projects | 59 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.68 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (62.037 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (45.370 % of family members) |
Environment Ontology (ENVO) | Unclassified (89.815 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (94.444 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 54.12% β-sheet: 0.00% Coil/Unstructured: 45.88% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.68 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Lake Marine Deep Ocean Marine Aqueous Sackhole Brine Freshwater To Marine Saline Gradient Marine Estuary Water Sea-Ice Brine Marine Marine Marine Seawater |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
DelMOSum2010_100478264 | 3300000101 | Marine | MVSIADRMKRINNCRDMMSKATCPRMRLMWKRNYEKLLKNYWEEQGERILRAAGKIH* |
DelMOSum2011_100298755 | 3300000115 | Marine | MVTTALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH* |
DelMOSum2011_101916531 | 3300000115 | Marine | MVTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGKVH* |
DelMOSpr2010_102413862 | 3300000116 | Marine | MTTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGKVH* |
DelMOSpr2010_102535952 | 3300000116 | Marine | MVSIADRMKRINNCRDMMSKATCPRMKAMWKRNYEKLLKNYWEEEGERILNAAGQVH* |
JGI24006J15134_101442272 | 3300001450 | Marine | MVTIASRMKRINNCRDMLTKATCPRMQAMWKRNYEKLLKDYWEEAGERILKAAGEIH* |
JGI24003J15210_1000357212 | 3300001460 | Marine | MVTIADRMKRINNCRDMLTKVTCPRMRLMWKRNYEKLLKNYWEEEGERILNAAGQVH* |
JGI24003J15210_1000844010 | 3300001460 | Marine | MVTIATRMRRINNCRDMLTKVSCPRMRLMWKRNYEKLLKKYWEETGERILNAAGQVH* |
JGI24003J15210_100199261 | 3300001460 | Marine | MVTTALTMRRINNCRDMLTKTTCPRMRLMWKRNYEKLLKKYWEEQGERILNAAGQVH* |
JGI24003J15210_100468151 | 3300001460 | Marine | MTTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH* |
JGI24003J15210_100545413 | 3300001460 | Marine | MTTIAGRMKRINNCRDMLTXAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGKVH* |
JGI24003J15210_100715281 | 3300001460 | Marine | MVTIAGRMKRINNCRDMLTKATCPRMQAMWKRNYEKLLKDYWEEAGERILKAAGQVH* |
JGI24003J15210_101171142 | 3300001460 | Marine | MVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWREQGERILRAAGEIH* |
JGI24003J15210_101363602 | 3300001460 | Marine | MVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQSERILRAAGKIH* |
JGI24004J15324_100377343 | 3300001472 | Marine | MTTIAGRMKRINNXRDMLTXAICPRMQAMWKRNXEKLLKDYWEEAGERILKAAGKVH* |
JGI24004J15324_101337491 | 3300001472 | Marine | TKPGGRVRMVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH* |
JGI24005J15628_100725462 | 3300001589 | Marine | MTTIAGRMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGKVH* |
JGI24005J15628_100726962 | 3300001589 | Marine | MVSIADRMKRINNCRDMMSKATCPRMRXMWKKNYEKLLKNYWEEEGERILNAAGQVH* |
JGI24005J15628_100873011 | 3300001589 | Marine | QRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQSERILRAAGKIH* |
JGI24005J15628_101058532 | 3300001589 | Marine | MVTTALTMQRINNCRDMLTQAQCPRMQLMWKRNYEKLLKKYWEEQGERILRAAGKIH* |
JGI24005J15628_102120022 | 3300001589 | Marine | MVTIAGKMKRINNCRXMLTKAICPRMXAMWKRNYEKLLKDYWEEAGERILKAAGKVH* |
JGI24524J20080_10105652 | 3300001853 | Marine | MVSIADRMKRINNCRDMMSKATCPRMRLMWKKNYEKLLKNYWEEEGERILNAAGQVH* |
JGI24524J20080_10131801 | 3300001853 | Marine | MVTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERIL |
Ga0065861_10257501 | 3300004448 | Marine | MVTTSRTVKRINNCRDMFTKAQCPRMRTLWKRNYEVLMKKYWEDVSERILTAAGQVH* |
Ga0065861_11313681 | 3300004448 | Marine | RMVTTALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH* |
Ga0066223_10232163 | 3300004461 | Marine | RMVSIADRMKRINNCRDMMSKATCPRMQAMWKRNYEKLLKKYWEEQGERILRAAGKIH* |
Ga0075462_100886213 | 3300006027 | Aqueous | MVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH* |
Ga0075441_100696093 | 3300006164 | Marine | MLTAIKRINNCRDMLTQATCPRMRKMWKRNYEKLLKNYWEDVGGRTLSAAGQVH* |
Ga0075441_102004983 | 3300006164 | Marine | MVTAIKRINNCRDMLTQATCPRMRKMWKRNYEKLLRKYWEDVGGRILSAAGQVH* |
Ga0075441_102632993 | 3300006164 | Marine | MVTAMKRINNCRDMLTQATCPRMRKMWKRNYEKLLRKYWEDVGGRTLSAAGQVH* |
Ga0075441_103570863 | 3300006164 | Marine | MVTAIKRINNCRDMLTKSTCPRMRKMWKRNYEKLLRKYWEDVGGRILSAAGQVH* |
Ga0070749_105280033 | 3300006802 | Aqueous | MVTIALTMHRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH* |
Ga0070750_101777631 | 3300006916 | Aqueous | MVTTSRTVKRINNCRDMFTKAQCPRMRTLWKRNYEVLMKKYWEDVSERI |
Ga0070746_103748952 | 3300006919 | Aqueous | MVTTALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKI |
Ga0070747_12839352 | 3300007276 | Aqueous | MVSIADRMKRINNCRDMMSKATCPRMQAMWKRNYEKLLKNYWEEEGERILNAAGQVH* |
Ga0105737_11047051 | 3300007862 | Estuary Water | PYMSLIRRINNCRDMLSKAQCPRMRKMWKKNYEKLLKKYWEEQGERILNAAGQVH* |
Ga0105747_12103612 | 3300007974 | Estuary Water | MVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKNYWEEQGERILRAAGKIH* |
Ga0075480_103749512 | 3300008012 | Aqueous | MVSIADRMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGKVH* |
Ga0114905_10833364 | 3300008219 | Deep Ocean | MVASLRIRRINNCRDMLTKVSCPRMRLMWKMNYEKLLKKYWEQEGERILNAAGQVH* |
Ga0114916_11146661 | 3300008221 | Deep Ocean | TAIKRINNCRDMLTQATCPRMRKMWKRNYEKLLRKYWEDVGGRILSAAGQVH* |
Ga0114994_101561013 | 3300009420 | Marine | MVTIAIRMKRINNCRDMLSKATCSRMRKMWKRNYEKLLKEYWEEEGERILNAAGQVH* |
Ga0114998_100578644 | 3300009422 | Marine | MVTIAVKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGQVH* |
Ga0114915_10166865 | 3300009428 | Deep Ocean | MEADIMTIALKMRRINNCRDMLTQAQCPRMQAMWKRNYEKLLKNYWEEQGERILRAAGEIH* |
Ga0115003_103183631 | 3300009512 | Marine | MVTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAA |
Ga0115003_103853291 | 3300009512 | Marine | MTTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAA |
Ga0115000_103842371 | 3300009705 | Marine | MVTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGQVH* |
Ga0115000_109462011 | 3300009705 | Marine | NRIFNNPPISMEANMTTIAGKMKRINNCRDMLTKPICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGKVH* |
Ga0133547_107268381 | 3300010883 | Marine | MTTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGEIH* |
Ga0151674_10464445 | 3300011252 | Marine | MVTTALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERIVRAAGKIH* |
Ga0180120_103596733 | 3300017697 | Freshwater To Marine Saline Gradient | RMKRINNCRDMMSKATCPRMKAMWKRNYEKLLKNYWEEEGERILNAAGQVH |
Ga0181398_11100171 | 3300017725 | Seawater | MVTIAIRMKRINNCRDMLSKAACPRMRKMWKRNYEKLLKNYWEEQG |
Ga0181381_10697732 | 3300017726 | Seawater | MSLIRRINNCRDMLSKAQCPRMRKMWKKNYEKLLKKYWEEQGERILRAAGKIH |
Ga0181415_10505131 | 3300017732 | Seawater | RMVTTALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH |
Ga0187222_10390911 | 3300017734 | Seawater | MVTIADRMKRINNCRDMLTKVTCPRMRLMWKRNYEKLLKNYWEEEGERI |
Ga0181421_12042792 | 3300017741 | Seawater | MVTIAIRMKRINNCRDMLSKAACPRMRKMWKRNYEKLLKNYWEEQGERILNAAGQIH |
Ga0181405_10801544 | 3300017750 | Seawater | MVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGE |
Ga0181407_11705482 | 3300017753 | Seawater | MSLIRRINNCRDMLSKAQCPRMRKMWKKNYEKLLKKYWEEQGERI |
Ga0181422_10496332 | 3300017762 | Seawater | MVTTALTMQRINNCRDMLSKAHCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH |
Ga0181413_12019231 | 3300017765 | Seawater | MVTIALTMQRINNCRDMLTQAQCLRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH |
Ga0187220_12297173 | 3300017768 | Seawater | MVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQSERILRA |
Ga0187217_11463603 | 3300017770 | Seawater | IRMVTIAIRMKRINNCRDMLSKAACPRMRKMWKRNYEKLLKNYWEEQGERILNAAGQIH |
Ga0181423_13518743 | 3300017781 | Seawater | MVTIAIRMKRINNCRDMLSKAACPRMRKMWKRNYEKLLKNYWEEQGERILRAAGKIH |
Ga0188856_10000695 | 3300019076 | Freshwater Lake | MVTIALKMKRINNCRDMLSKVTCPRMRLMWKRNYEKLLREYWEETGERILNAAGQVH |
Ga0211554_101221784 | 3300020431 | Marine | MVTIAGRMKRINNCRDMLSKAQCPRMRKMWKRNYEKLLKNYWEEQGERI |
Ga0211576_100159203 | 3300020438 | Marine | MSLIRRINNCRDMLSKAQCPRMRKMWKKNYEKLLKKYWEEQGERILNAAGQIH |
Ga0211676_101677963 | 3300020463 | Marine | MVASLRIRRINNCRDMLTKVSCPRMRLMWKMNYEKLLKKYWEQEGERILNAAGQVH |
Ga0211577_100586695 | 3300020469 | Marine | MVTTALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKNYWEEQGERILRAAGKIH |
Ga0211577_108677922 | 3300020469 | Marine | MVTIATRMRRINNCRDMLTKVSCPRMRLMWKRNYEKLLKKYWEEQGERILNAAGQVH |
Ga0212023_10018772 | 3300022061 | Aqueous | MVTIALTMHRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH |
Ga0224906_10308284 | 3300022074 | Seawater | MVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH |
Ga0212022_10065462 | 3300022164 | Aqueous | MVTTALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH |
Ga0196887_11083092 | 3300022178 | Aqueous | MVTTSRTVKRINNCRDMFTKAQCPRMRTLWKRNYEVLMKKYWEDVSERILTAAGQVH |
Ga0207905_10072093 | 3300025048 | Marine | MVTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGKVH |
Ga0207905_10072395 | 3300025048 | Marine | MVTTALTMQRINNCRDMLTQAQCPRMQLMWKRNYEKLLKKYWEEQGERILRAAGKIH |
Ga0207905_10228583 | 3300025048 | Marine | MVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQSERILRAAGKIH |
Ga0207905_10369943 | 3300025048 | Marine | RVRMVTTALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH |
Ga0207905_10497223 | 3300025048 | Marine | MVSIADRMKRINNCRDMMSKATCPRMRLMWKKNYEKLLKNYWEEEGERILNAAGQVH |
Ga0207896_10157421 | 3300025071 | Marine | MTTIAGRMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGKVH |
Ga0207890_10080905 | 3300025079 | Marine | MVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKNYWEEQGERILRAAGKIH |
Ga0209535_100811014 | 3300025120 | Marine | MVTTALTMRRINNCRDMLTKTTCPRMRLMWKRNYEKLLKKYWEEQGERILNAAGQVH |
Ga0209535_10097284 | 3300025120 | Marine | MVTIADRMKRINNCRDMLTKVTCPRMRLMWKRNYEKLLKNYWEEEGERILNAAGQVH |
Ga0209535_10506527 | 3300025120 | Marine | RVRMVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWREQGERILRAAGEIH |
Ga0209535_10591313 | 3300025120 | Marine | MTTIADRMKRINNCRDMMSKATCPRMRLMWKRNYEKLLRNYWEEEGERILNAAGQVH |
Ga0209535_10755793 | 3300025120 | Marine | MTTTALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKI |
Ga0209535_11001434 | 3300025120 | Marine | PGGRVRMVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH |
Ga0209634_10400873 | 3300025138 | Marine | MVTIAGKMKRINNCRDMLTKATCPRMQAMWKRNYEKLLKDYWEEAGERILKAAGEIH |
Ga0209634_11370314 | 3300025138 | Marine | VRMVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKNYWEEQGERILRAAGKIH |
Ga0208032_10278295 | 3300025266 | Deep Ocean | MVTAMKRINNCRDMLTQATCPRMRKMWKRNYEKLLRKYWEDVGGRTLSAAGQVH |
Ga0208814_10161431 | 3300025276 | Deep Ocean | MEADIMTIALKMRRINNCRDMLTQAQCPRMQAMWKRNYEKLLKNYWEEQGERILRAAGEI |
Ga0208814_10239025 | 3300025276 | Deep Ocean | MLTAIKRINNCRDMLTQATCPRMRKMWKRNYEKLLKNYWEDVGGRTLSAAGQVH |
Ga0208644_13276933 | 3300025889 | Aqueous | MVTIAGKMKRINNCRDMLTKATCPRMQAMWKRNYEKLLKKYWEEQGERILRAAGKIH |
Ga0209384_10470331 | 3300027522 | Marine | MVTAIKRINNCRDMLTQATCPRMRKMWKRNYEKLLRKYWEDVGGRILSA |
Ga0209384_11344872 | 3300027522 | Marine | MVTAIKRINNCRDMLTKSTCPRMRKMWKRNYEKLLRKYWEDVGGRILSAAGQVH |
Ga0209710_12251142 | 3300027687 | Marine | MVTTSRTVKRINNCRDMFTKSQCPRMRTLWKRNYEVLMKKYWEDVSERILTAAGQVH |
Ga0209816_10577765 | 3300027704 | Marine | MVTAIKRINNCRDMLTQATCPRMRKMWKRNYEKLLRKYWEDVGGRILSAAGQVH |
Ga0209192_103181753 | 3300027752 | Marine | MVTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGEIH |
Ga0209502_100329293 | 3300027780 | Marine | MVTIAIRMKRINNCRDMLSKATCSRMRKMWKRNYEKLLKEYWEEEGERILNAAGQVH |
Ga0209502_103340611 | 3300027780 | Marine | MVTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAG |
Ga0209711_101516772 | 3300027788 | Marine | MTTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGEIH |
Ga0209830_100336157 | 3300027791 | Marine | ANMTTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGQVH |
Ga0209830_102069901 | 3300027791 | Marine | MTTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKA |
Ga0209090_102415133 | 3300027813 | Marine | MVTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGQVH |
Ga0256368_10304891 | 3300028125 | Sea-Ice Brine | MTTIAGKMKRINNCRDMLTKATCPRMQAMWKRNYEKLLKDYWEEAGERI |
Ga0307488_101312145 | 3300031519 | Sackhole Brine | MVSIADRMKRINNCRDMMSKATCPRMQAMWKRNYEKLLKNYWEEEGERILNAAGQVH |
Ga0307488_102112193 | 3300031519 | Sackhole Brine | MVTIAGRMKRINNCRDMLTKATCPRMQAMWKRNYEKLLKDYWEEAGERILKAAGEIH |
Ga0302121_100443694 | 3300031626 | Marine | MTTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGQVH |
Ga0308015_100090512 | 3300031694 | Marine | MVIAIKRINNCRDALTTATCSRMRKMWKRNYEILLRNYWRDTSERILTAAGEVH |
Ga0314858_091187_218_391 | 3300033742 | Sea-Ice Brine | MVSIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGKVH |
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