Scaffold Ga0314858_033853

Overview

Basic Information

• Taxon OID: 3300033742
• Scaffold ID: Ga0314858_033853
• Source Dataset Name: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1191
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.2943
  • Long. (^o): -156.7153
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F020017	Metagenome / Metatranscriptome	226	Y
F066838	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314858_033853_3_533	F020017	N/A	RADLGSQETSTSGSTFLNRGNMGMQNQAGLGNLLPLLTGAGRLLSSRGGQIATGVGLATAAFGQSMGGRERPVLTQSRRNKAKVRQLVNFMGIEGTADFLSQSIGQNVSPNDVVALLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEAVSMGTTRRAPVRRTVNRSTSIKI
Ga0314858_033853_543_908	F001611	GAGG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRIASATDTAGTSATADTFLNVSVNNAEFSKDVSVPALVTGQPFGVLNGSYVNNDLITTGAQRNRVLVRFTNDTAATRTIRCGIFVG
Ga0314858_033853_909_1190	F066838	GGAGG	MGQEFFINSQDLEDKVRKLLPSQGGAGAGFDLSASTQIIPIIDLTESAEGSNLREDLQTSLSFDSITAFSINGGTNTVIINNTGYYRVFGIILT