Scaffold Ga0326733_1009262

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326733_1009262

Scaffold Ga0326733_1009262

Overview

Basic Information
Taxon OID	3300033555 Open in IMG/M
Scaffold ID	Ga0326733_1009262 Open in IMG/M
Source Dataset Name	Glacier ice microbial communities from Ngari, Tibet, China - 14_GP2_30.8
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2774
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacier → Ice → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	China: Ngari, Tibet
Coordinates	Lat. (^o)	35.2833	Long. (^o)	81.4833	Alt. (m)		Depth (m)	30
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042189	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326733_10092622	F042189	AGAAGG	VADLYEVLLVDGGTRWHAGFLVDDETETDVLLRDGTVVPLFASRAGLEHHLQGTRHELQDDLPDEVDLDLGGWLATGSPEPTLGEVSQLWHVLVDDPVAGKGLAGEQVGEVYDDLVEEEPDWFAVHGAAARRSLGEAVRRLRGVLRPV

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