NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033555

3300033555: Glacier ice microbial communities from Ngari, Tibet, China - 14_GP2_30.8



Overview

Basic Information
IMG/M Taxon OID3300033555 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133511 | Gp0348938 | Ga0326733
Sample NameGlacier ice microbial communities from Ngari, Tibet, China - 14_GP2_30.8
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size258642185
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameExtreme Environments Viral Communities From Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Ice → Glacier → Ice → Extreme Environments Viral Communities From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomeglacier ice fieldice
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationChina: Ngari, Tibet
CoordinatesLat. (o)35.2833Long. (o)81.4833Alt. (m)N/ADepth (m)30
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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