Scaffold Ga0316212_1003883

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316212_1003883

Scaffold Ga0316212_1003883

Overview

Basic Information
Taxon OID	3300033547 Open in IMG/M
Scaffold ID	Ga0316212_1003883 Open in IMG/M
Source Dataset Name	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2167
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Norway: Oslo
Coordinates	Lat. (^o)	59.9979	Long. (^o)	10.7895	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F073170	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316212_10038833	F073170	N/A	MSEEQVVAQKVRRTAVEIEQIVSEFQSSGMSRSQFCRVRGLTFGVLNRYLERMRGAADSGASDDGLVAVEWGGKKPSAERASSCSLSVVLRSGREIRVNTGFDAATLQRLVEVLETM

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