NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316596_1019320

Scaffold Ga0316596_1019320


Overview

Basic Information
Taxon OID3300033541 Open in IMG/M
Scaffold IDGa0316596_1019320 Open in IMG/M
Source Dataset NameMetatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1728
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Source Dataset Sampling Location
Location NameUSA: Alabama
CoordinatesLat. (o)30.2619Long. (o)-88.2383Alt. (m)Depth (m)0 to .07
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084294Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0316596_10193201F084294AGTAGGMSTATKSRPTKSDVVEFTCARCEVTSRWTQGLGAATPPNWVKEKGLYYCLACRRERAMEQAVEKAGGDSVSTADRAKLRSAAVVDFEIARDPDRTEGEIAKAARASIGAVRKA

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