Scaffold Ga0316616_100705474

Overview

Basic Information

• Taxon OID: 3300033521
• Scaffold ID: Ga0316616_100705474
• Source Dataset Name: Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1209
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3776
  • Long. (^o): -82.5117
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008132	Metagenome / Metatranscriptome	338	Y
F057310	Metagenome / Metatranscriptome	136	Y
F073599	Metagenome / Metatranscriptome	120	Y
F085710	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316616_1007054741	F085710	AGG	MDYLDYYDEVYTDIYLEFGADSVSDPDYAEQLLKKGNK
Ga0316616_1007054742	F073599	AGGA	MSANLYTIESLLIGKPYNSRSVSGEIISAEKHPQAVWYDGAEAYLVEIRKQGGGYTYRSVAVSV
Ga0316616_1007054743	F057310	AGGA	MKITYSVWQGSICKGTGFTAKKMSEVMDTIKELNSTDVKPKFEAYISKVEQEVK
Ga0316616_1007054744	F008132	AGGA	MTMWDTIQEDIKDQYAHWDDSDFDLTEEEQDDFFGFSKAIEIDHLTDEEVEEVFNMFGDK