Scaffold Ga0310811_10285966

Overview

Basic Information

• Taxon OID: 3300033475
• Scaffold ID: Ga0310811_10285966
• Source Dataset Name: Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1914
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 36.0
  • Long. (^o): -78.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002603	Metagenome / Metatranscriptome	544	Y
F020952	Metagenome / Metatranscriptome	221	Y
F050608	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310811_102859661	F020952	GGA	MPIIEKTIRFAAIALAVLFIGLSLLGIFGAWFVDG
Ga0310811_102859663	F002603	AGGAG	MTAIAVRFPDECVKLDNVEERRVLTDLEVIYEGGLLHGETVDFPTRDLERVVVGLHLRNWNFFETYKRTICVDIRSQRTIFRYAGVVTSKTDNSSWWERLLAELRIRKLKAIEI
Ga0310811_102859665	F050608	AGGAGG	MRLRIRTVLCGTAIFSAVSFFTIAFAETTPFNKAQVGDRIRKVENGVDDFEKYLTSRGENAKDQ