Scaffold Ga0326726_10632280

Overview

Basic Information

• Taxon OID: 3300033433
• Scaffold ID: Ga0326726_10632280
• Source Dataset Name: Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1031
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.3286
  • Long. (^o): -76.4792
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y
F058360	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326726_106322802	F005268	GAGG	VSRSDEENEEQQVWRVLSEAGLVDIRLDEFAERIRDVKRIVIVRLRELLDFDTANKERESAAYSLGTLKKLELKVMASAPKPPDPSEL
Ga0326726_106322803	F003832	N/A	MMKSTANQLRSEANWPPEAGEVISFQSSAGPETAILREVRWGLVWRDFILKDGRVIPEHRISGCPQPQVWRKIDEVTDDEREDCEERLLAMAGAGMDPRERDQSFWAELNQYLAYTYLRFKQAGR
Ga0326726_106322804	F058360	N/A	PQLVPNVEPVTNANTLGMALATSAAVPDPDTGFMLRVEQAVDRVLSRGDWPRPSTKGSRIVSRKPNPEEGN