Scaffold Ga0214472_10029725

Overview

Basic Information

• Taxon OID: 3300033407
• Scaffold ID: Ga0214472_10029725
• Source Dataset Name: Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5618
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 42.9888
  • Long. (^o): -108.3994
  • Depth (m): 175

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020674	Metagenome / Metatranscriptome	222	Y
F080386	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214472_100297253	F020674	GGGGG	VLLRPNSPAPWSSGLGPSHPCAKCGADTAGIAIGGLCPNCTRLLERRASKIGRLVAIGTTVPLAVYVAMALPVERTARLVGAACVLLWYVLTFLIAKRVTLEFLR
Ga0214472_100297257	F080386	AGG	MTLALLLVLAQSQTIVDIRDLTPREHRMSAFVLTAPQELKITAVGAEPWPDRLRRRDDEHWEDDEQTTWPAAAWILD