NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214472_10029725

Scaffold Ga0214472_10029725


Overview

Basic Information
Taxon OID3300033407 Open in IMG/M
Scaffold IDGa0214472_10029725 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5618
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)175
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020674Metagenome / Metatranscriptome222Y
F080386Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0214472_100297253F020674GGGGGVLLRPNSPAPWSSGLGPSHPCAKCGADTAGIAIGGLCPNCTRLLERRASKIGRLVAIGTTVPLAVYVAMALPVERTARLVGAACVLLWYVLTFLIAKRVTLEFLR
Ga0214472_100297257F080386AGGMTLALLLVLAQSQTIVDIRDLTPREHRMSAFVLTAPQELKITAVGAEPWPDRLRRRDDEHWEDDEQTTWPAAAWILD

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