Scaffold Ga0326727_10000050

Overview

Basic Information

• Taxon OID: 3300033405
• Scaffold ID: Ga0326727_10000050
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 486585
• Total Scaffold Genes: 408
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 307 (75.25%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000634	Metagenome / Metatranscriptome	971	Y
F000688	Metagenome / Metatranscriptome	937	Y
F000987	Metagenome / Metatranscriptome	813	Y
F001117	Metagenome / Metatranscriptome	773	Y
F001591	Metagenome / Metatranscriptome	667	Y
F009983	Metagenome / Metatranscriptome	310	Y
F035035	Metagenome	173	Y
F083076	Metagenome / Metatranscriptome	113	N
F089726	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326727_10000050243	F009983	AGGA	MKKSQICAVVLLLVVGSVMAFADGINDPKVIIHGVNGDLSQDCDQCKLVGVNFSFSSPKGGSGPLFFTNASGKNWTSLALIESGEPAADISCVQTLFLNCSVTTLTSGKDKGDVEILLSGVRGGLNPRVGILAGQSFSITFNCAGGCWPKTPITFNGHATTAVPEPGTVALMVTGLGTLFSRRKLWKGRLSA
Ga0326727_10000050259	F000688	N/A	MTHFPHANVNQRSPRVQLHGSVAAAVLAEGGHRSRAKLQSISVNGGLLQLQQELSTGDFVEIAFHTRSGAIHGMAEMLHPTGKFQSACFQPFRFIALADDDHRKLRMALDSALDRSFLDPVSEQLQTPPGF
Ga0326727_10000050266	F000987	AGGAG	MSIQEVSAEQLAELFHHYHQALGPDFGFTTQATAESWEQISQQERKRMVEAARMTMLEVAGAPRAEEHSRRYFAKPGEAEWGC
Ga0326727_10000050305	F001591	GAG	MIRLSSSTVIKSKIQAGLGAKVDRRRERRLKLELPVRIWGVDKMARPFAELVRVRNVSNGGAVLVGVRSKVQEGEVLDVQHGASRAQFRIVWLNLSGEAGIQALAFEPPILGIGLPKAFAMVGTG
Ga0326727_10000050307	F089726	N/A	MSDEKVDLLCEHCGQAFSAFLHEMADHNAKVTSCPNCGKPNDCKPAKGPKSAASVRGKSG
Ga0326727_1000005035	F000634	AGGAGG	VPASANSTIKILYAESDDSTLSAQSAEMSHAGHQVTTALNRHAVQDALKRDGFDLVILGATLSKDDRHHLPYMVRKTNPETKILVMHAGTHHHEVDAVVDSNLSMNRILDKIATLLQPAV
Ga0326727_10000050378	F001117	GAGG	MPENLLLISTPFYRCSGPNCGVLKGGSDRWWIIWSSFGDYELPVMHLAPWDEKLALQEGAMHVCGEGCAQKLQSQFMGNVLQSRARRSGG
Ga0326727_1000005069	F083076	GGA	MYPSMAYKATTIEELIAIMKRVQGDKTLTQFAAELDLSKQYVSNVYNRHKEPSERLLGKLGFTRQTTYLRSPTAASRERKK
Ga0326727_1000005081	F035035	GGA	MLGPYETRLLRNKVSSRRKKDKRAYFLNDREVSMKCLATICFAMMTVTGTGAGQEATNTGRPESLPQPTGLRTVVGCLSKTADTYVVTGGAPGPKQFRIVSGNVSALKGKIGHTVKVVGMVGKNDALANQNGLYNEGSTTGVGYLTIEARKVSEVYGNCSEPGKEWAGEHN