Scaffold Ga0326728

Basic Information
Taxon OID	3300033402 Open in IMG/M
Scaffold ID	Ga0326728_10001160 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033402 Open in IMG/M

Scaffold ID

Ga0326728_10001160 Open in IMG/M

Source Dataset Name

Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	95175
Total Scaffold Genes	100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	73 (73.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

95175

Total Scaffold Genes

100 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

73 (73.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: New York

Coordinates

Lat. (^o)

42.5488

Long. (^o)

-76.2662

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008273	Metagenome / Metatranscriptome	336	Y
F011792	Metagenome / Metatranscriptome	287	Y
F013823	Metagenome / Metatranscriptome	268	Y
F091202	Metagenome	107	Y
F097751	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000116011	F091202	GGAGG	MLFAVHPIFRKLARPAALALALFSLTFLLQVTPHVHANGQDEATCGLCQVAHLGVTPAVAVISLSIPIVSFGQVAIRTEVSLAETPCGHSSSRAPPFSFAS
Ga0326728_1000116068	F008273	GGAGG	MNTNNAAIRQDLIENSVGHQVSTLTSSAASPGQLETLLNSELDHDLIEWPRQYLETYLDSDATGRVPLNPEQLQDVLEAAFDRDGTAARDYLEELNGERGPTNLGDSTLQIVTRRGEGKDKSYELLFDPTDSEDLKHLIEQLDIRAWEKQNAQNTPALETKPDIERRETTASVATHQPGSGAVEIHDKTTGTDVRRLLGGGQLPAGLQSALKKMGPNALVKDAQTDSGIYRGAITGETDKKVIQQITSRIVVLHPKDLLDILPAVGENVRIAYSNDRASVVPVKDRSKTQEVGR
Ga0326728_1000116074	F097751	GAGG	MRSLLAMLFYIDHKCDTQPAFRKTFLVFTLIFVLLLWSPWRPLLCPVLGVCPAPNVRADTAPEPKSIPHLAKHKKKIAPSPDRVPAESSDQVAVQP
Ga0326728_1000116086	F013823	AGGA	MENRKQQCGKDSVHDASAFSSVLFVTVAAILVGAALSLVPGMGMSRMVFPGAERFALAVMVLGFSGVLVTALLNLPDMTRRTLVVLFAAALLCSGFVALVVWFAVSGASGRWL
Ga0326728_1000116097	F011792	GGA	MNQLVNSALLVFYSKGGETKLKKPAKGRGSSVHSYDTMSEAERRELHQMLAELSAMQSVPFEAEEPNGSYYEYDRNLKATVKVTPDGERTPVEKLEAGFEPTRGKVPRKIAREEIRT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326728_10001160

Overview

Ecosystem & Geography

Associated Families

Sequences