NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000484

Scaffold Ga0326728_10000484


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000484 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)155742
Total Scaffold Genes182 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)166 (91.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002289Metagenome / Metatranscriptome574Y
F010935Metagenome / Metatranscriptome297Y
F032049Metagenome181Y
F083104Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000484105F010935AGGAGGMPDIATVQDSAQHCFEVAKSRGFLEEDIALEAFELLTANDYDRVSAHALGVSV
Ga0326728_100004842F083104AGGAMELDRIYALAKRVKQRLNCSQQMAEYIASILAWEHAANEPRFELLAEIQAVHAVRQSL
Ga0326728_1000048439F002289AGGAMFGQMMVEPVVQVEPGVDLQTAVATLVRVAENVEVVRWIELPASVLLFLLVPGDPDSGAVYVLDRKKGTWYAVDFEDEQFGGYSVSQLEMLLKDCNFLDLIERPGPWRGGLQWVVLPGMRPEAAV
Ga0326728_1000048497F032049AGGAGGMTRTTKRMSVFLLAPLILVAMATAQTQHQGLTVSVQGYPGDAPVVELQGRSYVEIQELARITNGSLSFEKDRIILTAPDCDVSKTASDDAAKPGFSRSFMRAAIEAMASIREWGGMLMITVQNGYPVGNTIAGNTIMAYQGRAADKVALASSEASTDSDYHGLELLRNEFNNVQAWADSYVKARSAMSAANLTISENALKDDQDVQKLVHCGQFLAQMFAGGTFQDDAACR

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