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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033402 Open in IMG/M |
| Scaffold ID | Ga0326728_10000333 Open in IMG/M |
| Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 190902 |
| Total Scaffold Genes | 163 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 146 (89.57%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006132 | Metagenome / Metatranscriptome | 380 | Y |
| F013290 | Metagenome / Metatranscriptome | 272 | Y |
| F038950 | Metagenome | 164 | Y |
| F085268 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326728_10000333151 | F085268 | AGGAGG | MSARNGDKARFGRLRKHRILLRKRLREIRDAVESKTTTTAIAASEYDGTSSRALKPMG |
| Ga0326728_1000033316 | F038950 | AGGAG | MTKPEPPATAVPPALRHENYLRACKAGLVMREADFRRRYHTLKHGLGRGASSLEESMAALGEDPAEFNSMLRLIERAFVPKNLPEYEVVLRLAGSIWRRLRLYKAAARWEEDALRQALSSGPDVVSLTVEETCLRACGLMTLLLDEPRVVRSRFQLLAEVERQIRALLKIRSGGKAKFRFISRQSRKAERELEEEERLWRVMDRIDQGGPEVEAILEKFCAQKERRRA |
| Ga0326728_1000033371 | F013290 | AGGAG | MKVELKPVIDALKHDANRLEHHARKLRATSPNFEAEAEDVDDRVESIRKQIEILEQWE |
| Ga0326728_1000033387 | F006132 | GGAGG | MKKWLCSIAGLSLALAGSLAAQAQTPAVPPPNILQIQTDNIKPYEDAPYDNLASEYPALSQQLKDPTHVLGMEALTGTPRAIYLSGFDSYEALQKNEEWLLGEAATDAKFDALDARQALHVSEVHHTIWHYRPDLSNNVAEADIPHSHYWEVVIFHMRSGHHEQFEELTKLYRDANLKIGQNIPWASYEGLTGVTAAYLVLVPMTSLKDADAGLAHAKDFGAALGDEGRAQMSKLSEESVTSVEDNIWMVIPEWSYVEKSWIDADPQFWAPEPAAKPARKPAAGATPAPKAPPAQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |