Scaffold Ga0326728_10000169

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000169
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 262722
• Total Scaffold Genes: 256
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 205 (80.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046785	Metagenome	150	Y
F048716	Metagenome	147	N
F064340	Metagenome	128	Y
F098569	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100001691	F098569	N/A	GPIQEVSAVVKGVRSGLEFLFSRRRVTNVSEATQDEQLFI
Ga0326728_10000169119	F064340	AGGA	MRVFLVEWECGSCGEIHSFRHSVNEDYGWPNKFELTCKNPECGKEQDVPFRACTVTPIEP
Ga0326728_10000169175	F046785	GGA	MKKDSPARSSNHRIRKKLVYVKSAAEIPDFKSEDEIAAWYQTHSTVLIQDQLETLPARVGGKLRARLAARRGNGNLLPTGQGRTRSAQ
Ga0326728_1000016998	F048716	GAGG	MAGFDLKFYLERFPEVCKQKFGRSYSLRALEKKFEPLCTGNRWLAAKDVLNIFDPTATPFGRYWPKPNEKELDHVLKKARLVLGPAPADPRELVRRALDVLHSTGIVSLVLRFVHPDRYGVFSTPIMNLLQVHRPRTIDLYLAYCDELRAWKEHFRLESVADTETALWTYHELVAGETHASEISTPHAEFDADVWIQRRRVAQVLRPFLRNYGPLELARILVEEEPKLAGKIAGEEYERLLRVAARELCGGMNLNVRGAIEILFDRLAEDGYISPEDKAQLDKAWRIRNAAVHAGRPPDPEQVDNMIDTIERICRSWEKPR