Scaffold Ga0326728_10000081

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000081
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 377046
• Total Scaffold Genes: 320
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 239 (74.69%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000138	Metagenome / Metatranscriptome	1954	Y
F000687	Metagenome / Metatranscriptome	937	Y
F000949	Metagenome / Metatranscriptome	823	Y
F001818	Metagenome / Metatranscriptome	630	Y
F002363	Metagenome / Metatranscriptome	567	Y
F003215	Metagenome / Metatranscriptome	500	Y
F004553	Metagenome / Metatranscriptome	433	Y
F005153	Metagenome / Metatranscriptome	410	Y
F014644	Metagenome / Metatranscriptome	261	Y
F042509	Metagenome	158	Y
F078987	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000081146	F000687	GGAGG	MESQPIETGTVASHANGHVQEVVRQAHEELRQLLHQRAEVMRRIGTIKQTIAGLANLFGDGVLSDELLELVDRKSNGRQPGFTKACRMILMDANRALSARDVCDRIQERMPPMLERHKDPMASVTTVLNRLVAYGEARAVALDNGRRAWKWVADVEQEPTQVLAAPSSQ
Ga0326728_10000081214	F002363	GGA	MNDIMNDLGLCLLVQLCLSFGVAGLFWPDKLMPIFELLMFPWSASYRGLRANSIAAIGLSLLLFVRLFVSTR
Ga0326728_10000081259	F000949	AGG	MPDAELRTPVLISHNVPNPHSPTSGARRDAPLYLLAAIAGMGTGWVDVVVNDLLFTALLVLAACMLLGLLRPRWPWRWVVAVVVFIPLAELGAYTILALKPTRGQVYGSFLTALPGMAGAYGGAVMRRVIDNLRQGK
Ga0326728_10000081264	F003215	GAG	MRGTIRTLRAVQWSMLGSILLYAAVGEVLGARARGVDPSLSYVFTTAGVAIVGVIFVVRRTLVWRSAQSLASHPDDSLTLNHWRSGYIATYALCEALGLFGLILRFMGCSFQQSLPFYIGGFVLLFFFGPREPVAV
Ga0326728_10000081273	F005153	GAGG	MQIFHIRYRNAQGALMRILNAISRRGLDLTSVHAEAAGQDHAVTVLLDVTHKQIGQLRREWYSIVDVVDVRSSLASVEHGHPAWTPLPPSSASISEQSARAALA
Ga0326728_10000081290	F042509	AGG	MKQLNFRARVLCCTTLVLLPFSRPATAASSICGGCEAAIVGVAIGIGAGIGVGIYLIHRGHTSLTGCVQQTGDGLSLIAKDSNIYGLVNAPSEVKARERLSLRGHKIKSHSGRAFRVDHVSRDYGACSP
Ga0326728_10000081304	F000138	N/A	MPVQAINSFRISFTTLVSYIPLIATVVTCLFSVILARATLRYVEATDKGLALAREGFEREWSPDLHIKLERVSASEANVIVTNLAKSSVLLQLLQLRKLTHAVPFERCRLNDPLVGGMTWTQAMGKRLLACTGKEFEGPIAASITFYCAGRMFRTDWFRSHIQVRDGRILSLEPSNMPARRVRVIEHKGRERRREFVQDVTAAATLNKPDARPDVEFFVTGA
Ga0326728_10000081312	F001818	GAG	MFKRRKTDRMPDEGSPQDVDIYRRAWHSYVARRNLVVVLFLSFIFLGFMIGKLKLGEPADFAILMGWIAVYLAGGWWLTEWKCPRCGKVFGHRIWTQRCISCDLSKDDIAAVVRAK
Ga0326728_100000818	F078987	AGGAGG	MNHINLFRSTPPTLNSVTWGKKIFDNTSTLIFAALLIVCSVAVGCSSDKPKPVSSETPVAQPMPPVTTSSTPAPVMPVQQAAAKPVHKKIVHKAPPTLTYADKTTGVSFQYPRKYALKTGDAATELVSSSPIPMDFVQPGGVALAAVSVPESTYPNSDLASAFFNVSMNKTLTADQCGEFSVPQPNPAAPADPTVEATAQLATPPISKLMIGDMELQSSETTSGQTTSGLREEASKYYHVFQNGACYEFALKVATTESNSSPTTDSTTKPVNRDEVFQRLEKILASVKINPITVPEVNAEVKTNTQPTETPAQ
Ga0326728_1000008184	F004553	AGGAG	LNPRFGKAAVAGLVVWALLFFVAAPRAHADDRSHCQHAVEKAEANLDRAIHDHGDHSPQAESRRRDLNAERQRCWDQYHQWWNGKEHRWETEQNWDNDHDHH
Ga0326728_1000008186	F014644	GGA	MDKKQINDPKMTLNFLIWVGGVFMLSLAALLAHFVWRVF