Scaffold Ga0326728_10000029

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000029
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 568686
• Total Scaffold Genes: 529
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 433 (81.85%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000312	Metagenome / Metatranscriptome	1324	Y
F002531	Metagenome / Metatranscriptome	551	Y
F004161	Metagenome / Metatranscriptome	450	Y
F027936	Metagenome / Metatranscriptome	193	Y
F034792	Metagenome / Metatranscriptome	173	Y
F060174	Metagenome / Metatranscriptome	133	Y
F075118	Metagenome / Metatranscriptome	119	Y
F096164	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000002910	F004161	AGG	MTGLRTGVLTCIEHERLEFELLELRTRGQYLSRLRRLTREEQAEWDRREQAALARLVDHELEHGCSR
Ga0326728_10000029166	F075118	GAGG	VSWPRDAFEALRQIVLIEHRINGLTDTVKQLALTCQDLDRRLVRLEAKFDLLESMATARRRTLPEKSEK
Ga0326728_10000029256	F002531	AGGA	MASAIASEGTLRIHRSIAGTSAPFRVTYQAYQDGDEPAPAVERAFYHLQDVREFLNVLGIGAEYVREALRELAAGRSAFLANIALTEKAIKNAGFTGLLAAARG
Ga0326728_10000029309	F060174	GGAG	MFPRLPVFLSSAVLSLLAIAAPLLPAQPNREKSVWNYDGGLQMMTDGSLPSGPCFRLGGRAMAPDFFDNLKRIDTELGAIIHRGNDIVTEFPAQLHLSFVMYDMPCENQVQNAGTRAYLTRALVSTLRLSFFWKHGVQLRPATGVIPKHFETRPILPYASDLAAELPEKFEWFFEFDVPSAGVPVTDSLVVILRTPDGRIAARAAARM
Ga0326728_10000029349	F000312	AGGAGG	MNRSILIVLIPALIVAAGYIVVLRMMGVAPGYPRLIVAMILFFSGIYWLSKRTGKKAKSGGQ
Ga0326728_10000029392	F096164	GAG	VLDRNESAHIHMPKNKLLLATGITFSILLAVFFGYRHWHSSNSLAVRTEMLSRMPGDASAVVYLDLAQLRTSPFLAQLFRWAPQPTPDSDYIQFLQATGFNYERDLDRLALAINRQSQNPTAFAIADGRFDRKKIEAYGGRYSSLKTADGKTLFAIPMGGSSHKAFFTFLRDDRMVWANDSSYFFQQPRGTSPEEWSEHFSRLAGTPLFAILRQESGAATALAQAPADLRSPQLAALLAQLQWISISGKPEGNLLRVGIEGECLTEGTVHQLKEFLSGLGVIAQMGLNDPKIRQQLDPELREGYLELLQSANIQQLDRGTSKSVRVVFDVTPKVLQTAHNPAAGADPLPPAPTH
Ga0326728_10000029448	F034792	AGGA	MLSPARLTQFTVELIFVLLGAVVVWLGLNGRVHFAPHSVLWLALSVGVIAWGLLAVAKPGQWWARWQRWNRGGSMILLGLIMLEIARAPFAWVGKLLALSGLVLILRGVLGSFLILKQG
Ga0326728_1000002982	F027936	N/A	VSTTPTSITAEEERLLQRVKNAFGAAFFLLVQYSPRLLQLHRNEKSWTLFRIALGCFGAALVILPLSLWHGYFTALLGLFLFVVSILLPSAELESATDRKARELGAQTVVSGGEYQPGNTKARQAQLFVSPSHTWALDKNFDPLVVINTAEISGLDVEPCADRWLLRVKWGDRKAEFTYKGIFAERFARLAEESLRQANFATLPKADKRRAARAS