Scaffold Ga0326728_10000011

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000011
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 866480
• Total Scaffold Genes: 791
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 527 (66.62%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043262	Metagenome / Metatranscriptome	156	Y
F043732	Metagenome / Metatranscriptome	155	Y
F067947	Metagenome / Metatranscriptome	125	Y
F078489	Metagenome	116	Y
F078980	Metagenome / Metatranscriptome	116	Y
F101528	Metagenome / Metatranscriptome	102	Y
F104802	Metagenome	100	Y
F105010	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000011245	F043262	AGGTGG	MRYTREEALNKIREYLVANTRDEETTCQAVGRMGVFCHGYDQWSTEQLRRMYPWLAKKMPEDTPREEFLKLVVAWDGARKLALKSATTCDAKASDHDGCLGFDRFSNYQLKRLFPAVFQGDDEIVQW
Ga0326728_10000011452	F078980	N/A	MVSIRAVVAATFVVLGARAVGADTTNADDFIAHQVATRTFEGDLRQVFHWGFPRRHVESLGHISYRAPDFLAIVLTNPAPELVLVRGDDLYIKRDKKAPATYKLEVRNGKPVQNVQFLLSFFQNGCTNFAALFDASVTRTPETCTVTLAPKHPLQMLPLRSVENVIALPSMDVRSMRIGLLMNGYITYEFRNPRRNQPLDASIFEVPKP
Ga0326728_10000011519	F067947	GGA	MSPRKPTDAEAWEQFEAEYSPPHKSPSHIKRQIETAKFGLDTALFAADHFVKNVQSQADFSFDQGSLRRTRALSLEEPRNSPRVKLDLDMWQGGTPYLGVRLIIPIGN
Ga0326728_10000011527	F101528	N/A	MTQIKGTLPISEVGSKRSPEERNIRRQLGKVRRYLAKSTDATFKSSWESRIRIYEAQLVKAEARARFIK
Ga0326728_1000001153	F043732	AGAAGG	MSFLSVNRSLTNQGGEVRQFRLPRMNPFPKLDRRIVRSTGSDGVRRMVSRPVTRGAVIIEGGCGCLPEMATDVIDISASYAVENVKRERSCNAPWSRIGFGHLVGRMLGSHRAARL
Ga0326728_10000011556	F078489	GGAGG	VTLDRPAVLGIVFGVIIGGVYITLQRRELRQKSTAIQPRGVAALAPGAVGRLVFLVAAWWLVFEFTAADKYWLTGALVVTYTAPLLVQLRQLLFPRK
Ga0326728_10000011696	F105010	GGAGG	MKWMLRITVAAIVALALWRAWQWLFVTDEMRVQRQISTMTSAVERGDIMKLSNALASDYSDSWGLDKSTLLGAVHSYRAQYDPIFIHISDLTVTVDPDHQKAQAVFIAKIIARARGGLSDSEAREDRFRLYFRRNDLGWELVRAESPELKFD
Ga0326728_1000001188	F104802	AGCAGG	MINTTHVSEVGMMRFALPEDGDADFLDRAAGEILRQPGVLRVRTNPARQEIEIVFKQPAEGLLRQVNNALQSVGTEMTASKVR