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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F101528 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 102 |
| Average Sequence Length | 68 residues |
| Representative Sequence | VIQIKGTLPISEVGSKRSPEERNIRKQLGKVRRYLAKSTDANMRSSWESRITVYETQLAKAEARARFIS |
| Number of Associated Samples | 88 |
| Number of Associated Scaffolds | 102 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 2.94 % |
| % of genes near scaffold ends (potentially truncated) | 18.63 % |
| % of genes from short scaffolds (< 2000 bps) | 75.49 % |
| Associated GOLD sequencing projects | 81 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.63 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (66.667 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (10.784 % of family members) |
| Environment Ontology (ENVO) | Unclassified (44.118 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (31.373 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 51.55% β-sheet: 0.00% Coil/Unstructured: 48.45% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.63 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 102 Family Scaffolds |
|---|---|---|
| PF07589 | PEP-CTERM | 2.94 |
| PF11154 | DUF2934 | 2.94 |
| PF04041 | Glyco_hydro_130 | 1.96 |
| PF04229 | GrpB | 1.96 |
| PF00076 | RRM_1 | 1.96 |
| PF07730 | HisKA_3 | 1.96 |
| PF10009 | DUF2252 | 1.96 |
| PF03422 | CBM_6 | 0.98 |
| PF13365 | Trypsin_2 | 0.98 |
| PF12762 | DDE_Tnp_IS1595 | 0.98 |
| PF02518 | HATPase_c | 0.98 |
| PF04519 | Bactofilin | 0.98 |
| PF01192 | RNA_pol_Rpb6 | 0.98 |
| PF00032 | Cytochrom_B_C | 0.98 |
| PF13544 | Obsolete Pfam Family | 0.98 |
| PF13249 | SQHop_cyclase_N | 0.98 |
| PF02834 | LigT_PEase | 0.98 |
| PF00132 | Hexapep | 0.98 |
| PF10150 | RNase_E_G | 0.98 |
| PF01028 | Topoisom_I | 0.98 |
| PF13414 | TPR_11 | 0.98 |
| PF01467 | CTP_transf_like | 0.98 |
| PF01643 | Acyl-ACP_TE | 0.98 |
| PF13509 | S1_2 | 0.98 |
| PF13396 | PLDc_N | 0.98 |
| PF13279 | 4HBT_2 | 0.98 |
| PF03279 | Lip_A_acyltrans | 0.98 |
| PF13432 | TPR_16 | 0.98 |
| PF08238 | Sel1 | 0.98 |
| COG ID | Name | Functional Category | % Frequency in 102 Family Scaffolds |
|---|---|---|---|
| COG2152 | Predicted glycosyl hydrolase, GH43/DUF377 family | Carbohydrate transport and metabolism [G] | 1.96 |
| COG2320 | GrpB domain, predicted nucleotidyltransferase, UPF0157 family | General function prediction only [R] | 1.96 |
| COG3850 | Signal transduction histidine kinase NarQ, nitrate/nitrite-specific | Signal transduction mechanisms [T] | 1.96 |
| COG3851 | Signal transduction histidine kinase UhpB, glucose-6-phosphate specific | Signal transduction mechanisms [T] | 1.96 |
| COG4564 | Signal transduction histidine kinase | Signal transduction mechanisms [T] | 1.96 |
| COG4585 | Signal transduction histidine kinase ComP | Signal transduction mechanisms [T] | 1.96 |
| COG1290 | Cytochrome b subunit of the bc complex | Energy production and conversion [C] | 0.98 |
| COG1514 | RNA 2',3'-cyclic phosphodiesterase (2'-5' RNA ligase) | Translation, ribosomal structure and biogenesis [J] | 0.98 |
| COG1560 | Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis) | Lipid transport and metabolism [I] | 0.98 |
| COG1664 | Cytoskeletal protein CcmA, bactofilin family | Cytoskeleton [Z] | 0.98 |
| COG1758 | DNA-directed RNA polymerase, subunit K/omega | Transcription [K] | 0.98 |
| COG3569 | DNA topoisomerase IB | Replication, recombination and repair [L] | 0.98 |
| COG3884 | Acyl-ACP thioesterase | Lipid transport and metabolism [I] | 0.98 |
| COG4261 | Predicted acyltransferase, LPLAT superfamily | General function prediction only [R] | 0.98 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 66.67 % |
| All Organisms | root | All Organisms | 33.33 % |
| Visualization |
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| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 10.78% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 9.80% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 9.80% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 8.82% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 6.86% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 4.90% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 4.90% |
| Fen | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen | 3.92% |
| Peat Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil | 3.92% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 2.94% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 2.94% |
| Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 2.94% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 2.94% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 2.94% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 1.96% |
| Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 1.96% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 1.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.96% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 1.96% |
| Freshwater Lake Sediment | Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment | 0.98% |
| Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 0.98% |
| Sediment (Intertidal) | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil | 0.98% |
| Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland | 0.98% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 0.98% |
| Permafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil | 0.98% |
| Bog | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog | 0.98% |
| Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 0.98% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 0.98% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2124908044 | Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5 | Environmental | Open in IMG/M |
| 3300003995 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2 | Environmental | Open in IMG/M |
| 3300004009 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2 | Environmental | Open in IMG/M |
| 3300004631 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300005533 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 | Environmental | Open in IMG/M |
| 3300005537 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 | Environmental | Open in IMG/M |
| 3300005538 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 | Environmental | Open in IMG/M |
| 3300005836 | Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300006642 | Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D | Environmental | Open in IMG/M |
| 3300006795 | Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B | Environmental | Open in IMG/M |
| 3300006914 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Host-Associated | Open in IMG/M |
| 3300009616 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 | Environmental | Open in IMG/M |
| 3300009621 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150 | Environmental | Open in IMG/M |
| 3300009632 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 | Environmental | Open in IMG/M |
| 3300009634 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150 | Environmental | Open in IMG/M |
| 3300009639 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40 | Environmental | Open in IMG/M |
| 3300009643 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 | Environmental | Open in IMG/M |
| 3300009644 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10 | Environmental | Open in IMG/M |
| 3300009662 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060 | Environmental | Open in IMG/M |
| 3300009839 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG | Environmental | Open in IMG/M |
| 3300010159 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 | Environmental | Open in IMG/M |
| 3300010341 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2 | Environmental | Open in IMG/M |
| 3300011120 | Combined assembly of Microbial Forest Soil metaT | Environmental | Open in IMG/M |
| 3300012203 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG | Environmental | Open in IMG/M |
| 3300012205 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG | Environmental | Open in IMG/M |
| 3300012683 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG | Environmental | Open in IMG/M |
| 3300012923 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG | Environmental | Open in IMG/M |
| 3300012929 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014159 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG | Environmental | Open in IMG/M |
| 3300014164 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG | Environmental | Open in IMG/M |
| 3300014165 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG | Environmental | Open in IMG/M |
| 3300014200 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG | Environmental | Open in IMG/M |
| 3300014498 | Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG | Environmental | Open in IMG/M |
| 3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014502 | Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014638 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG | Environmental | Open in IMG/M |
| 3300014838 | Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014839 | Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300015264 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300017925 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40 | Environmental | Open in IMG/M |
| 3300017927 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4 | Environmental | Open in IMG/M |
| 3300017931 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100 | Environmental | Open in IMG/M |
| 3300017935 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40 | Environmental | Open in IMG/M |
| 3300017938 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150 | Environmental | Open in IMG/M |
| 3300017946 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10 | Environmental | Open in IMG/M |
| 3300017955 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 | Environmental | Open in IMG/M |
| 3300018024 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100 | Environmental | Open in IMG/M |
| 3300018040 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150 | Environmental | Open in IMG/M |
| 3300018044 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10 | Environmental | Open in IMG/M |
| 3300018046 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10 | Environmental | Open in IMG/M |
| 3300018086 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG | Environmental | Open in IMG/M |
| 3300018090 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300019999 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1 | Environmental | Open in IMG/M |
| 3300020199 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
| 3300023101 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14 | Environmental | Open in IMG/M |
| 3300023311 | Combined Assembly of Gp0281739, Gp0281740, Gp0281741 | Environmental | Open in IMG/M |
| 3300024290 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08 | Environmental | Open in IMG/M |
| 3300025442 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes) | Environmental | Open in IMG/M |
| 3300025477 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150 (SPAdes) | Environmental | Open in IMG/M |
| 3300026557 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal | Environmental | Open in IMG/M |
| 3300027826 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027857 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027869 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027896 | Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes) | Environmental | Open in IMG/M |
| 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Host-Associated | Open in IMG/M |
| 3300030007 | I_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300031234 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2 | Environmental | Open in IMG/M |
| 3300031236 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1 | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300032160 | Sb_50d combined assembly (MetaSPAdes) | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032205 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 | Environmental | Open in IMG/M |
| 3300032770 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 | Environmental | Open in IMG/M |
| 3300032782 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1 | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032892 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5 | Environmental | Open in IMG/M |
| 3300032893 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 | Environmental | Open in IMG/M |
| 3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
| 3300033402 | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN | Environmental | Open in IMG/M |
| 3300033405 | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY | Environmental | Open in IMG/M |
| 3300033557 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B | Environmental | Open in IMG/M |
| 3300033818 | Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M | Environmental | Open in IMG/M |
| 3300033887 | Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1 | Environmental | Open in IMG/M |
| 3300033977 | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 | Environmental | Open in IMG/M |
| 3300033983 | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction | Environmental | Open in IMG/M |
| 3300034091 | Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| A5_c1_01634460 | 2124908044 | Soil | MTQIKDTLPVSGVRPKQNPEVRPKRSPEERNICKQLGNVRRYLAKSTDANFKSSWESRITVYEKQLAKAEARARFIR |
| Ga0055438_101892472 | 3300003995 | Natural And Restored Wetlands | MTQAKGTLPASEVHPKRSPEERNIRKQLGKVRRYLAKSKNANMRNSWESRITIYEAQLARAEARARFIR* |
| Ga0055437_100646661 | 3300004009 | Natural And Restored Wetlands | MIQAKGPMPGSEVNPKRSPEERNIRKQLGKVRRYLPKSKADNGRSWWESRIAVYEKQLKKAEARARFIG* |
| Ga0058899_115372412 | 3300004631 | Forest Soil | SPVSEISPKRSPEERNIRKQLGKVRRYLAASTNSNMRSSWESKITIYKAQLVKAEARARFIE* |
| Ga0070734_100869762 | 3300005533 | Surface Soil | MTVTKGTLPISAVGSKRNPEERNIRKQLGRVRRYFAKSTGAAFKGFWEDRIEVYEGQLAKAEARARFTK* |
| Ga0070730_100344193 | 3300005537 | Surface Soil | VIPIEGKLPISKVQPKQSPEERNIRKQLAKVRRYFAKSADANIKAAWENRIAVYEVQLKKAEARARFVV* |
| Ga0070730_104192032 | 3300005537 | Surface Soil | MIQIKRSPPISEVGSKRSPEERNIRKQLGKVRRYLAKSRDATFQSSWESRITVYEAQLVKAEARARFIK* |
| Ga0070731_100388203 | 3300005538 | Surface Soil | VIPIEGKLPISKPQPKRSPEERNIRKQLGRVRRYLAKSTDANIKSAWENRITIYEAQLKKAEARAHLIG* |
| Ga0074470_102567702 | 3300005836 | Sediment (Intertidal) | MIQAKGTMPGSEVNPKRSPEERNIRKQLGKVRRYLAKSKADNGRSWWESRITVYEKQLKKAEARARFIG* |
| Ga0070765_1019666222 | 3300006176 | Soil | VTEKKGTSPNSEISPKRSPEERNIRKQLANVQRYLAASTNPNMRSSWESKITVYKAQLVKAEARARFIE* |
| Ga0075521_102299012 | 3300006642 | Arctic Peat Soil | MTQKKDTLPVSGVRPKQSPEVHPKRSLEERNICKQLGKVRRYLAKSTAANMRSSWESRITVYEKQLAKAEARARFIR* |
| Ga0075520_10218927 | 3300006795 | Arctic Peat Soil | EVRPKRSPEERNIRKQLGKVRRYLAKSTAANMRSSWESRITIYEAQLAKAEARARFIG* |
| Ga0075520_10785281 | 3300006795 | Arctic Peat Soil | MTQIEGTLPVSKIHPKRSPEQSPEERNICKQLGKVRRYLAKSTDANMRSWWENRVKTYETQLAKAEARAD* |
| Ga0075520_12246511 | 3300006795 | Arctic Peat Soil | QIEGTLPVSGVRPKQNPKVHPKRSPEERNICKQLGKVRRYLAKSTDANMRSWWESRIKTYETQLAKAEASAA* |
| Ga0075520_13121842 | 3300006795 | Arctic Peat Soil | MTQIKDTLPVSGVRPKQNPEVRPKRSPEERNICKQLGNVRRYLAKSTDANFKSSWESRITVYEKQLAKAEARARFIR* |
| Ga0075436_1002416642 | 3300006914 | Populus Rhizosphere | VIPIEGTPPISKVQPKRSPEERNIRKQLGRVRRYLAKSTDANIKSAWENRITIYETQLKRAEARARFIG* |
| Ga0116111_11140182 | 3300009616 | Peatland | MTQVKGTLPISEVHPKRSPEERNIRKQLGKVRRYLAKSTDANMRSSWENRITVYEAQLVKAQARARFIM* |
| Ga0116116_10154922 | 3300009621 | Peatland | MIPTEGTLPISKVHPKQSPKRSPEERNIRKQLGKVRRYLAKSTDANMRSSWESRIAVYETQLAKAEARARFIM* |
| Ga0116102_11182373 | 3300009632 | Peatland | MTPTKGTVPISPKRTPEERNIRKQIGKVRRYLAKSTDATYKSSWESRIRVYEGQLAKAEARARFIK* |
| Ga0116102_12112332 | 3300009632 | Peatland | MTQIKGTLPISEAGSKRSPEERNIRKQLGKVRRYLAKSTDPTFKSSWENRITVYEAQLAKAEARARFIR* |
| Ga0116124_11120993 | 3300009634 | Peatland | ISKVHPKQSPKRSPEERNIRKQLGKVRRYLAKSTDANMRSSWESRIAVYETQLAKAEARARFIM* |
| Ga0116122_11127412 | 3300009639 | Peatland | MTQIKGTLPISEVGSKRSPEECNIRKQLGKVRRYLAKSTDATFKSSWENRIAVYETQLVKAEARARFIR* |
| Ga0116110_11178621 | 3300009643 | Peatland | TLPISEAGSKRSPEERNIRKQLGKVRRYLAKSTDPTFKSSWENRITVYEAQLAKAEARARFIR* |
| Ga0116121_10545452 | 3300009644 | Peatland | MTQIKGTLPISEAGSKRSPEERNIRKQLGKVRRYLAKSTDPTFKSSWENRIIVYEAQLAKAEARARFIR* |
| Ga0105856_12738441 | 3300009662 | Permafrost Soil | SEISPKRSPEERNIRKQLANVRRYLAASTNANMRNSWESKIVIYKAQLVKAEARARFIA* |
| Ga0116223_105705332 | 3300009839 | Peatlands Soil | MTQIKGTLPISEVGSKRSPEERNIRKQLGKVRRYLARSTDASFKSSWENRIIVYEGQLAKAEARARYIG* |
| Ga0099796_100478603 | 3300010159 | Vadose Zone Soil | MTPTKGALPVSEVSRILSPEERNILRQLGKVRRYLAKSKAANMRSSWESRITIYEAQLAKAEARACHIG* |
| Ga0074045_104868722 | 3300010341 | Bog Forest Soil | VIQTKGTLPASEVSRNRSPEERNIRKQLGKVRRYLAKSTDTNMRSSWESRIAVYEGQLVKAEARNRWIG* |
| Ga0150983_118599861 | 3300011120 | Forest Soil | GTLPISVVGSKRSPEVRNICKQLGKVRRYLAKSTDASFKSSWESRITVYKAQLVKAEARARFIK* |
| Ga0150983_145048931 | 3300011120 | Forest Soil | TKGTAPISEAARKRSPEERNIRKQLGRVRRYLAESTDANFKFSWENRIIVYEAQLARAEARARFIK* |
| Ga0137399_111514342 | 3300012203 | Vadose Zone Soil | MTEKKGTSPISEISPNRSPEERNIRKQLANVRRYLAASTDSNMRNSWESKITTYKAQLVKAEARARFIR* |
| Ga0137362_104681523 | 3300012205 | Vadose Zone Soil | VTEKKGTSPISEISPKRSPEERNIRKQLGKVRRYLAASTNTNMRNSWESKITVYKAQLVKAEARARLIR* |
| Ga0137398_104813051 | 3300012683 | Vadose Zone Soil | VWSVIEKKGTTPISEISPKRSPEERNIRKQLGKVRRYLAASTNTNMRSSWESKITIYKAQLVKAEARARFIR* |
| Ga0137359_104939271 | 3300012923 | Vadose Zone Soil | MTEKKGTSPISEISPNRSPEERNIRKQLANVRRYLAASTDSNMRNSWESKITTYKAQLVKAEARARFIK* |
| Ga0137404_115428301 | 3300012929 | Vadose Zone Soil | VTEKKGTSPISEISPKRSPEERNIRKQLGKVRRNLAASTNTNMRNSWESKIAIYKTQLVKAEARARFIR* |
| Ga0181530_100479285 | 3300014159 | Bog | MTQIKGTLPISEVGSKRSPEERNIRKQLGKVRRYLAKSTDPTFKSSWENRITVYEAQLAKAEARARFIR* |
| Ga0181532_101780562 | 3300014164 | Bog | MMQPKGTLPISEVGPKRSPEERNIRKQLGKVRRYLAKSTDASFRNSWENRITVYEAQLARAEARARFIR* |
| Ga0181523_102065482 | 3300014165 | Bog | MTPTKGTVPISPKRSPEERNIRKQIGKVRRYLAKSTDATYKSSWESRIRVYEGQLAKAEARARFIK* |
| Ga0181526_101795912 | 3300014200 | Bog | MMQTKGTLPISEVGPKRSPEERNIRKQLGKVRRYLAKSTDASFRNSWENRITVYEAQLARAEARARFIR* |
| Ga0182019_105915312 | 3300014498 | Fen | MIPIEGTLPISKVHPKQSPKRSPEERNIRKQLGKVRRYLAKSTDANMRSSWESRITVYEMQLAKAEARARFIS* |
| Ga0182024_100264381 | 3300014501 | Permafrost | VTEIKGARPVSEIIPKQSPEERNIRKQLGRVRRNLAASTNTNMRSLWEGRITTCKAQLAKAEARARFLG* |
| Ga0182021_102186272 | 3300014502 | Fen | VIQIKGTLPISEVGSKRSPEERNIRKQLGKVRRYLAKSTDANMRSSWESRITVYETQLAKAEARARFIS* |
| Ga0181536_103779913 | 3300014638 | Bog | TKGTLPISEDSSKRSPEERNIRKQLGKVRRYLAKSTDANMRSSWENRITVYEAQLVKAEARARYIG* |
| Ga0182030_100755441 | 3300014838 | Bog | VTEIKGARPVSEIIPKRSPEERNIRKQLGRVRRNLAASTNTNMRSLWEGRITTCKTQLAKAEARARFLG* |
| Ga0182027_110712612 | 3300014839 | Fen | VTEKKGTTPASEISPKRSPEERNIRRQLGKVRRYLAASTNANMRNSWESKIAIYKTQLVKAEARARFIK* |
| Ga0182027_123630852 | 3300014839 | Fen | LPSLEHGKIKGTQPISEVHPQRSPEERNILKQLGKVRRYLAKSTDANMRSSWESRITVYEMQLAKAEARARFIS* |
| Ga0137403_102500812 | 3300015264 | Vadose Zone Soil | VTEKKGTSPISEISPKRSPEERNIRKQLGKVRRNLAASTNTNMRNSWESKITTYKAQLVKAEARARFIK* |
| Ga0187856_10606212 | 3300017925 | Peatland | MTQIKGTLPISEVGSKRSPEECNIRKQLGKVRRYLAKSTDATFKSSWENRIAVYETQLVKAEARARFIR |
| Ga0187824_102073801 | 3300017927 | Freshwater Sediment | MTPIIKGSQPISEVGSNRSPEVRNIRKQLAKVRRYLAKSTDATFKSSWENRITVYEAQLAKAEARARFIK |
| Ga0187877_13273491 | 3300017931 | Peatland | MTQIKGTLPISEAGSKRSPEERNIRKQLGKVRRYLAKSTDPTFKSSWENRITVYEAQLAKAEARARFIR |
| Ga0187848_103775591 | 3300017935 | Peatland | MTPTKGTVPISPKRTPEERNIRKQIGKVRRYLAKSTDATYKSSWESRIRVYEGQLAKAEARARFIK |
| Ga0187848_104595151 | 3300017935 | Peatland | MTQIKGTLPISEAGSRRSPEERNIRKQLGKVRRYLAKSTDPTFKSSWENRITVYEAQLAKAEARARFIR |
| Ga0187854_102176822 | 3300017938 | Peatland | MIPTEGTLPISKVHPKQSPKRSPEERNIRKQLGKVRRYLAKSTDANMRSSWESRIAVYETQLAKAEARARFIM |
| Ga0187879_100619465 | 3300017946 | Peatland | VPISPKRTPEERNIRKQIGKVRRYLAKSTDATYKSSWESRIRVYEGQLAKAEARARFIK |
| Ga0187879_107067191 | 3300017946 | Peatland | MAQIKGTLPISEDGRKRSPEERNIRKQLGKVRRYLAKSTDPSFKSSWENRITVYEAQLVKAEARARFIK |
| Ga0187817_106876432 | 3300017955 | Freshwater Sediment | VCVAWTMTQIKGTPPISEVGSKRSPEERNIRKQLGKVRRYLAKSTDPTFKSSWESRIAVYEAQLVKAEARARFIK |
| Ga0187881_102155313 | 3300018024 | Peatland | MTPTKGTVPISPKRTPEERNIRKQIGKVRRYLAKSTDATYKSSWESRIRVYEGQLAKA |
| Ga0187862_103638801 | 3300018040 | Peatland | MAQIKGTLPISEDGRKRSPEERNIRKQLGKVRRYLAKSTDPTFKSSWENRITVYEAQLAKAEARARFIR |
| Ga0187890_106499612 | 3300018044 | Peatland | MAQIKGTLPISEDGRKRSPEERNIRKQIGKVRRYLAKSTDATYKSSWESRIRVYEGQLAKAEARARFIK |
| Ga0187851_102003334 | 3300018046 | Peatland | MAQTKSTLPISEIGSKRSPEERNIRKQLGKVRRYLAKSTDPTFKSSWENRITVYEAQLAKAEARARFIR |
| Ga0187769_102593771 | 3300018086 | Tropical Peatland | MQPNSEVHSKRSPEERNIRKQLGTVRRYLAKSSDASFRSFWESRITVYEEQLAKAEARARLIK |
| Ga0187770_109209551 | 3300018090 | Tropical Peatland | MASTKGTVPISEIRQNPEDRNIRKQLGKVRRYLAKSSDASFQSFWESRITVYEKQLAKAEARARFIS |
| Ga0193718_10052733 | 3300019999 | Soil | VTEIKGTRPASEISPKRSPEERNIRKQLGKVRRYLAASTNSNMRNSWESKIAIYKTQLVKAEARARFNG |
| Ga0179592_105184871 | 3300020199 | Vadose Zone Soil | MTEKKGTSPISEISPKRSPEERNIRKQLANVRRYLAASTDSNMRNSWESRITTYKAQLVKAEARARFIR |
| Ga0210401_102774542 | 3300020583 | Soil | VTEKKGTSPKSEISPKRSPEERNIRKQLANVQRYLAASTNSNMRSSWESKIVVYKAQLVKAESRARFNG |
| Ga0224557_100057232 | 3300023101 | Soil | VTEIKGARPVSEIIPKQSPEERNIRKQLGRVRRNLAASTNTNMRSLWEGRITTCKAQLAKAEARARFLG |
| Ga0256681_101951351 | 3300023311 | Freshwater | MIPTEGTLPISKVHPNQSPKRSPEERNIRKQLGKVRRYFAKSTDANMRSSWESRIAVYETQLAKAEARARFIM |
| Ga0247667_100005432 | 3300024290 | Soil | VTETKGTKPVSEISPKRSPEERNIRKQLGKVRRYLAASTNTNMRNSWESKITTYKAQLVKAEARARFIK |
| Ga0208034_10949702 | 3300025442 | Peatland | MTQVKGTLPISEVHPKRSPEERNIRKQLGKVRRYLAKSTDANMRSSWENRITVYEAQLVKAQARARFIM |
| Ga0208192_10562411 | 3300025477 | Peatland | ISKVHPKQSPKRSPEERNIRKQLGKVRRYLAKSTDANMRSSWESRIAVYETQLAKAEARARFIM |
| Ga0179587_100749722 | 3300026557 | Vadose Zone Soil | VTEKKGISPISEISPKRSPEERNIRKQLANVRRYLAASTDSNMRNSWESRITTYKAQLVKAEARARFIR |
| Ga0209060_100800553 | 3300027826 | Surface Soil | MTVTKGTLPISAVGSKRNPEERNIRKQLGRVRRYFAKSTGAAFKGFWEDRIEVYEGQLAKAEARARFTK |
| Ga0209166_100372885 | 3300027857 | Surface Soil | VIPIEGKLPISKVQPKQSPEERNIRKQLAKVRRYFAKSADANIKAAWENRIAVYEVQLKKAEARARFVV |
| Ga0209579_100241713 | 3300027869 | Surface Soil | VIPIEGKLPISKPQPKRSPEERNIRKQLGRVRRYLAKSTDANIKSAWENRITIYEAQLKKAEARAHLIG |
| Ga0209777_107657262 | 3300027896 | Freshwater Lake Sediment | MTQTKGTLPISEVGSKRSPEERNIRKQLGNVRRYLAKSTDASFKSSWESRITIYEAQLEKAEARARHIG |
| Ga0265338_1000070720 | 3300028800 | Rhizosphere | MAQIKGTLPISEDASKRSPEERNIRKQLGKVRRYLAKSTDANMRSSWESRIAVYETQLEKAVARARFIK |
| Ga0265338_101339974 | 3300028800 | Rhizosphere | VIQIKGTLPVSEVRPKQSPEEHNICKQLGKVRRCLAKSTDANFKSFWESRITVYEKQLAKAEARARLIR |
| Ga0265338_102679692 | 3300028800 | Rhizosphere | VTEKKGTSPISEISPKRSPEERNIRKQLGKVQRYLAASTNPNMRNSWESKIVIYKAQLVKAEARARFIQ |
| Ga0311338_105631792 | 3300030007 | Palsa | VIPTEGTLPISKVQPKRSPERSPEERNIRKQLGKVRRYLAKSTDANMKTSWENRIIVYEAQLAKAEARARFIR |
| Ga0302325_104571333 | 3300031234 | Palsa | MVQTKGTLPVSETDRKRSPEERNIRKQLGRVRRYLAKSTDPNFKNSWEGRIAVYEGQLAKAETRARFIK |
| Ga0302324_1012366223 | 3300031236 | Palsa | LVCVIYGMVQTKGTLPVSETDRKRSPEERNIRKQLGRVRRYLAKSTDPNFKNSWEGRIAVYEGQLAKAETRARFIK |
| Ga0307469_118806201 | 3300031720 | Hardwood Forest Soil | MIQIKDTVPVSEVRPKRSPEERNIRKQLGNVRRYLTKSTAANMRGWWESRITIYETQLEKAEARARLIG |
| Ga0311301_114015511 | 3300032160 | Peatlands Soil | MMQTKGMLPISEAGSKRSPEERNVRKQLGKVRRYLAKSTDASFQSSWEDRITVYETQLARAEARARFIR |
| Ga0307471_1006587102 | 3300032180 | Hardwood Forest Soil | MIQIKDTVPVSEVRPKRSPEERNIRKQLGNVRRYLANSTAANMRGWWESRITIYETQLEKAEARARSIG |
| Ga0307472_1022508392 | 3300032205 | Hardwood Forest Soil | MIQIKDTVPVSEVRPKRSPEERNISKQLGNVRRYLTKSTAATMRSWWESRITIYETQLEKAEARARSIG |
| Ga0335085_10000285107 | 3300032770 | Soil | MTPIKGPLPIPEAGSKRSPEERNIRRLLGRVRRNLAKSTQATFKSSWESRVKTLEAQLATAGVRARFIK |
| Ga0335082_114742691 | 3300032782 | Soil | MIQIKDTVPVSEVRPKRSPEERNIRKQLGNVRRYLAKSTAANMRGWWESRITIYETQLTKAEARAR |
| Ga0335079_1000081030 | 3300032783 | Soil | MTQIKGTLPISPEERNIRKQLGKVRRYLAKSTDTNFKSWWENQIKVYEAQMAKAEARGRFIG |
| Ga0335079_100450633 | 3300032783 | Soil | MIETKFTPPVSEVRPKRSPEERNICKQLGKVHRYLAKSTDANMRSWWENQIKTYEKQLAKAEARACFIR |
| Ga0335081_100539789 | 3300032892 | Soil | MIETKGTLPASEVRPKGSSEERNIRKQLGKVRRYLAQSTDANMRSWWENQIKTYETQLAKAEARARFIG |
| Ga0335081_115902331 | 3300032892 | Soil | MTQIKGALPIPEAGSKRSPEERNIRKQLGKVRRYLAKSTDATFKSSWESRITVYEKQLAKAEARARFIR |
| Ga0335069_1000023477 | 3300032893 | Soil | MTQTKGALPISEVGSKRSPEERNIRRLLGKVRRHLARSTEATFKSSWESRVKVLEAQLATAEARARFIK |
| Ga0335069_100608408 | 3300032893 | Soil | MTPTKGTLPIPEAGSKRSPEERNIRRLLGRVRRNLAKSTQATFKSSWESRVKTLEAQLATAGVRARFIK |
| Ga0335077_110114952 | 3300033158 | Soil | MTQIKGTLPISPEERNIRKQLGKVRRYLTKSTDANFKSWWENQIKAYETQLAKAEARARFNT |
| Ga0326728_10000011527 | 3300033402 | Peat Soil | MTQIKGTLPISEVGSKRSPEERNIRRQLGKVRRYLAKSTDATFKSSWESRIRIYEAQLVKAEARARFIK |
| Ga0326727_103114662 | 3300033405 | Peat Soil | EVSRNRSPEERNIRKQLGKVRRYLAKSTDTNMRSSWESRIAMYEGQLVKAEARNRWVG |
| Ga0316617_1026447741 | 3300033557 | Soil | CLMLSMTQTKGTLPVSEVHPKRSPEERNILRQLGKVRRYLAKSTDANFKSSWENRIIVYEAQLVRAEARARLIR |
| Ga0334804_130190_3_206 | 3300033818 | Soil | VTEIKGARPGSEIIPKRSPEERNIRKQLGRVRRNLAASTNTNMRSLWEGRITTCKAQLAKAEARARFL |
| Ga0334790_000029_5779_5988 | 3300033887 | Soil | VTEIKGARPGSEIIPKRSPEERNIRKQLGRVRRNLAASTNTNMRSLWEGRITTCKTQLAKAEARARFLG |
| Ga0314861_0032703_2526_2729 | 3300033977 | Peatland | MASIKGTVPISEIRRSPEDRNIRKQLGKVRRYLAKSSDASFKSFWESRITVYEKQLAKAEARARFIS |
| Ga0371488_0329352_3_191 | 3300033983 | Peat Soil | LPISEVGSKRSPEERNIRRQLGKVRRYLAKSTDATFKSSWESRIRIYEAQLVKAEARARFIK |
| Ga0326724_0055416_889_1098 | 3300034091 | Peat Soil | VIQTKGTLPISEVSRNRSPEERNIRKQLGKVRRYLAKSTDTNMRSSWESRIAMYEGQLVKAEARNRWVG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |