NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334722_10088056

Scaffold Ga0334722_10088056


Overview

Basic Information
Taxon OID3300033233 Open in IMG/M
Scaffold IDGa0334722_10088056 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2372
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033427Metagenome177Y
F048988Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0334722_100880561F048988AGAAGMPNRPYEYYPAWDGKQTSAGITELVKLCAARWATKNLGTYVNRNMNNNIKPPQKSVHATGSAFDCQYKDEKQAFLIWQFLLANSKTLGIAEIHWYAYGEYGAGYRCSRGEGLQGVKVFTISDNAGSYSGTPNWLHIEIDQAMSKDAAKFAKAWASCPYP
Ga0334722_100880563F033427AGGMELPYGTFHDAITGETFTRKLTPEEVAALPEPTEPLE

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