Scaffold Ga0307510_10000013

Overview

Basic Information

• Taxon OID: 3300033180
• Scaffold ID: Ga0307510_10000013
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 274569
• Total Scaffold Genes: 239
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 186 (77.82%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.654
  • Long. (^o): -122.839

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015225	Metagenome / Metatranscriptome	256	Y
F028422	Metagenome / Metatranscriptome	191	Y
F033060	Metagenome / Metatranscriptome	178	Y
F050738	Metagenome	145	Y
F097431	Metagenome / Metatranscriptome	104	Y
F098787	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307510_10000013148	F098787	GAGG	VGTETISEIVSNYELTIACEKCGAQSPKTIGWIRLHRDMKCPQCDAVIVLNTSRITGTIRSVERRLGDLQSQLTERIRKL
Ga0307510_10000013168	F033060	AGGAG	VTEESRMGKLESDVHHLQADVTEIKSDVKSLRSEFLSFKIEVAKEFGSVSTSIESLRTAIEQAKLWMVVTGAGMILSVWGAAVALARFLKP
Ga0307510_10000013175	F033060	AGGAG	MIEEGRFGKLESDVQHLQADMTEVKGEVKSLRNAFDLLRGEFLSFRTEVAKEFGTVAKEFGTVAKEFGSVASEFGSVRASIESLRTDIERAKLWMVVTGSGMILSVWGAALALARFLKP
Ga0307510_1000001327	F015225	N/A	MKSSHGTFAAIVWIVAGALLYNTEPEAKLISWQTPVFFVLGMFAAGVLFGNLSYAGVRGLTHALVSAKIVTAPTRRAQIGLTVAGYLIFAAQVALIYVLAKWTIRVMFGLDGPF
Ga0307510_1000001333	F028422	GAGG	LRIQGINQARLMEESELCIAESAKFGSPAQMLVASRLLAHPEAYRRWEAEHAQLMRRVSEHRYLNRQVVALRSTALSLMHRKAVFEYLQERQLTRQQRHKLMSMFHTLKDYSASLIAEHGNYVRGASSYYCSHHVARGLMKDAAFAEPLWLYQERYTDYFRVHCDVELAESQSEKQAVEPMRLLQPLLKKQLAEARQEILSMAYRPQKVWREVEIRKPTGDTERLRALGDTDIARILAEGAVDKRSRR
Ga0307510_1000001350	F050738	N/A	MHKVVFAACLLLASALTVAKDPTQLLLHKGARVGIVNIMDAEVTHFHTSKNLSESFFKTHLLNWNVDSMLADAVSQRLTQLELVAVPLGASDALLHDRDENFVNNSVAKGLSKEVARQFAQLAASERLEALIVLAPALNNSSQAAGGPFRKDLPDYLRGWGYVTGDPTSKPALFDWTQVLLIGITADGAKLQAREWGGGYTDLWVDYVAPPDPKRPPVDVLDKLQPIFGRILQRQAVRVTDWVTVTP
Ga0307510_1000001364	F097431	GGA	MSRINALEARRQALLNKCEEQRLELSYRVAQITPRNALTAWTRSRRKGGGITSLLPLIAGAGGLLMMLLRRRRRRSRGGGAGLGVGLITTVLALTGRATTVLRILAQLRALYMTYKATRRPERRPEHD