Scaffold Ga0307507_10007883

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10007883
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15083
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050242	Metagenome	145	Y
F067329	Metagenome / Metatranscriptome	125	Y
F081096	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100078831	F081096	N/A	MHIYRGGYRGNIGQLDKDLIVRDTGQLIKGGDISLVSRRGESRLSGIGPSVSTAPLLQDTVGLL
Ga0307507_100078832	F081096	N/A	MHTYRGGYRGNTGQLDKDLTVKDIGQLIKGGDTSLVSRRGESRLFSIGPSISTAPLLQDTVGLL
Ga0307507_100078835	F050242	GGA	MHLCVPTSTAKDVGHFSLGSREVVYISFKLVLQLKLLIIKYRVSSVYK
Ga0307507_100078837	F067329	AGG	VLRAVIVNVLGIANITDIADVADIVMDIADIATDIVNIADIVNIWILRWR