Scaffold Ga0307507_10003998

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10003998
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27071
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041034	Metagenome	160	Y
F067329	Metagenome / Metatranscriptome	125	Y
F096350	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000399815	F041034	AGG	VDVGRILILIKSSGILGLVELGGLFRYRVDVSGNFKLVDSGGFFRF
Ga0307507_1000399816	F096350	N/A	MAGLVYFFSARAFLISAIITAKIIYLGFLASRANRVALII
Ga0307507_1000399817	F067329	AGG	VLGAGIADVSGIANITDIADIADIVTDIADIAIDVADIADPILRIL