Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10002250 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41212
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (52.94%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

41212

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (52.94%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F037003	Metagenome	168	Y
F041034	Metagenome	160	Y
F056213	Metagenome	137	Y
F066630	Metagenome	126	Y
F081096	Metagenome	114	Y
F088008	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100022501	F081096	N/A	MHIYRGGYRGNTGQLDKDLTVRDIGQLIKRGDTSLVSRRGKSRLFGIGPSISMAPLL
Ga0307507_1000225010	F066630	N/A	MLLAAGTENYNTLLLTQKGLKAATRWLISQNVLDQFWVAKEIAIKGKGASNRRPLITLQE
Ga0307507_1000225011	F000630	GGAG	MGVEGTEVDLGKGNPSHSMGNAIGGKYPRAPRGPNKGGKYNGNTLKDRNNRTKRLALLGGCPSR
Ga0307507_1000225012	F000630	GAG	MEVKGIEVDLGKGNPSYSIGNTIGGKYPRAPKGPNKGRKYNSNTFKDRNNRTKRLALLGGYPSK
Ga0307507_1000225013	F066630	N/A	MLLAASIENYNTLLLTQKGLKAATQWLIGQNVLDQFWVIKEIAIEGKGASNRRPLITLQE
Ga0307507_1000225015	F041034	AGG	MDVSGSFILVEFGKILRLVELGRLLRYIVDISRNFRLVDPSRFFRFQF
Ga0307507_100022502	F088008	GGAG	MLLHLIIKGSFRRNVIALNSLLIKIASFTVCNRANNSAFVLNVITIPCLFAL
Ga0307507_100022503	F037003	AGGA	MVEGETKEYAIKDETTEEIVEVKRNHLSMPAMHYSRTTPLIERAYKDIL
Ga0307507_100022509	F056213	N/A	VDFGVRHSISLYRLLMTFAQALRAPGRSTPIREVFSLGLRDLIRLLTSVELFQPVSFM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10002250

Overview

Ecosystem & Geography

Associated Families

Sequences