NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000909

Scaffold Ga0307507_10000909


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000909 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65863
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (57.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004318Metagenome / Metatranscriptome443Y
F027375Metagenome194Y
F041034Metagenome160Y
F056213Metagenome137Y
F081096Metagenome114Y
F088008Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000090911F088008GAGVLSHLIIKGLFRRNVITLNSLLVKIASFAIYNRANNLASMLDVITIPCLFAL
Ga0307507_1000090919F027375N/AMVPLLDIIPLSILNKSHYSKNRSANSAAIIIIITAKYSKNFVYLLIITKIALATFLVLILVGGKPIIKSIINSNMGPCGIGSTNNLLYR
Ga0307507_1000090920F081096N/AMHIYGGGYRGNTGQLDKDLTVRDIGQLIKGGDISLVSRRGESRLSSIGPSISTAPLL
Ga0307507_100009094F004318N/AVLSRLRLSLVSYIVSYLALGLVLGIELVLDLGLGSLSILFIIEY
Ga0307507_100009098F041034AGGVDVSGILILVEFGEILGLVELGGLFRYKVDISRNFRLVDSSRFFRF
Ga0307507_100009099F056213N/AMDFGIRRSISLYYLLITFAQALRAPGRSIPIREVFSSGLRDLIRLLISTESFQPVSFT
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