Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10000190 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	113237
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (75.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

113237

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (75.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000630	Metagenome	971	Y
F004318	Metagenome / Metatranscriptome	443	Y
F014479	Metagenome / Metatranscriptome	262	Y
F037003	Metagenome	168	Y
F078050	Metagenome / Metatranscriptome	116	Y
F088008	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000019010	F088008	GGAG	VLLYLIIKGSFRRNIITLNSLLIKIASFTVCNRANNSASVLNVITIPCLFAF
Ga0307507_1000019011	F037003	AGGA	MVEGKTKEYATKNKTTEETVEVKRNYLSIPVMYYLRTTPLTERARKDIL
Ga0307507_1000019025	F078050	N/A	MVDIKEQLDKEKQLENLRDGIRARQKDSDEITVQLTH
Ga0307507_1000019026	F000247	AGG	VYTYAIYIALNCKCTLYIEVACTSYLAGSLNIFIGKTPVPSSNILFTCPFIDGKLYYNGGLSLNKSIDLTSTGL
Ga0307507_1000019028	F014479	GGAGG	LLSSSVITVIEGVCVFLRVVGDRRYIRVFKLLAHLGIRAYSAVLPRGLYCRNLLLLEGPSCFSATAFYKVFIEFPFRLSRDF
Ga0307507_100001903	F004318	N/A	VLSKLRLSLVSYIVSYLGLGLVLGIELVLDLGLGFLSIPFIIEYQFF
Ga0307507_100001904	F000630	GGAG	MGVKGTEVDLGKGNLSRSIGNAIGGKYLRAPKGPNKGRKYNSNTLKDRNNRTKRLALLGRYPSG
Ga0307507_100001905	F000630	GAG	MGVKGIEVDLGKGNLSRSIGNTMGGKYLRALRGPNKGRKYNGNTLKDRNNRTKKLALLGGYPSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10000190

Overview

Ecosystem & Geography

Associated Families

Sequences