Scaffold Ga0334884_1130313

Overview

Basic Information

• Taxon OID: 3300033170
• Scaffold ID: Ga0334884_1130313
• Source Dataset Name: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_12_05 R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 753
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin276 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Source Dataset Sampling Location

• Location Name: Netherlands: Wageningen, Gelderland
• Coordinates
  • Lat. (^o): 51.9691
  • Long. (^o): 5.6654

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059692	Metagenome / Metatranscriptome	133	N
F099347	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334884_11303131	F059692	N/A	DKETEQLILKKLQLDYLSLHAILTDVEKIISALVVDLDPRVNEIQRIQDQIRVYLREP
Ga0334884_11303133	F099347	AGG	MNLADFIENFEAFITYIEEAWEQKDLEILKAIVSDCEDFIHSHGHQFKCYSQTVKEWKETYRKNREERKEIVKGICEWCGRKKGTNCHHLAKRGRLVLYNDVRLLRILCADCHRLFHS