Scaffold Ga0334893_1005318

Overview

Basic Information

• Taxon OID: 3300033161
• Scaffold ID: Ga0334893_1005318
• Source Dataset Name: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_09_05-R3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6635
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Atribacterota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Source Dataset Sampling Location

• Location Name: Netherlands: Wageningen, Gelderland
• Coordinates
  • Lat. (^o): 51.9691
  • Long. (^o): 5.6654

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071725	Metagenome	122	N
F072892	Metagenome	121	N
F076577	Metagenome	118	N
F093482	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334893_100531810	F093482	AGGAGG	VEERTLDELWERIEKEDPVLWAQMEKFYGPMSKKILLMKWNRVKHKCKKDWRFEKLIDDWLIQSRLRKHGGKCLFEHKKRSRA
Ga0334893_100531812	F071725	AGGAGG	MKTLLNKPESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLYAHDEEIKAIREKWERKEINKVGLFHELEKLSKVESLPG
Ga0334893_100531813	F076577	AGGAGG	MFWPENKVISLMEIVFHFGAINYELNNGKKIREMWKEFKENCIDKRLKYINPDPRCTHPVNLDVIDYCWGYARKIDKGEEIGMEELCEGCEFFREEVKNENPTQ
Ga0334893_100531814	F072892	AGGAGG	MDINLLKTISTRLFGLYSQFKSIVSDLETNNTLDNREWAGELLNNLATELYYEANCLTDVLYPPRKEEKDETMFKIDGIIDAERNPMSEDEFFELFIKWAEENKLQFGGGIGAYREEEEDVLAGK