NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0369856_117995

Scaffold Ga0369856_117995


Overview

Basic Information
Taxon OID3300033157 Open in IMG/M
Scaffold IDGa0369856_117995 Open in IMG/M
Source Dataset NameHuman adult male fecal microbial communities from Ikoma, Japan - F1-S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe University of Tokyo
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1137
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Adult Male Fecal → Human Fecal Microbial Communities From Ikoma, Japan

Source Dataset Sampling Location
Location NameJapan: Ikoma
CoordinatesLat. (o)34.7321Long. (o)135.7306Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092227Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0369856_1179952F092227AGGAGGMKEEKRKRILRVGCLILAGIFVLSMLGSVVMMLLV

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