Scaffold Ga0369856_100940

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0369856_100940

Scaffold Ga0369856_100940

Overview

Basic Information
Taxon OID	3300033157 Open in IMG/M
Scaffold ID	Ga0369856_100940 Open in IMG/M
Source Dataset Name	Human adult male fecal microbial communities from Ikoma, Japan - F1-S
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	The University of Tokyo
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3254
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Adult Male Fecal → Human Fecal Microbial Communities From Ikoma, Japan

Source Dataset Sampling Location
Location Name	Japan: Ikoma
Coordinates	Lat. (^o)	34.7321	Long. (^o)	135.7306	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078693	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0369856_1009403	F078693	GAG	MVFAPMRGAERFFIKADCSLLMSKENQKSTSDFDALDPRERGYSPLSDPEGVVEAQKC

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.