Scaffold Ga0335084_10111076

Overview

Basic Information

• Taxon OID: 3300033004
• Scaffold ID: Ga0335084_10111076
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2850
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070071	Metagenome / Metatranscriptome	123	N
F080214	Metagenome	115	N
F087420	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335084_101110761	F070071	N/A	EAFDMLTVIGAAMVAGTSAGFWYLLPRNGNEHPLVQNNGVGSMVTIVILTLFIVGVAVMCEGLLG
Ga0335084_101110763	F080214	AGGA	MKADAGSRDPVATFGMARKKSHKSILLRFTEALKESRRRQARRVIATYAHLLAARDTPDDDNHH
Ga0335084_101110766	F087420	AGG	MREQPQMRSKFGACAKRSAAGGAIALALSGLPHAPASAAKPPYGNCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRHYWYCR