Scaffold Ga0335072_10124874

Overview

Basic Information

• Taxon OID: 3300032898
• Scaffold ID: Ga0335072_10124874
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3223
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003586	Metagenome / Metatranscriptome	478	Y
F011812	Metagenome / Metatranscriptome	287	Y
F025803	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335072_101248743	F003586	GGAG	MAKKLTKTERSERDARHERVLANARRTRELAERAQAKLDARAQRP
Ga0335072_101248744	F011812	N/A	MDDAPIERAEVVALLFNVSDIAVTLTNIERLLGEDDGEEADED
Ga0335072_101248746	F025803	N/A	VTGLRGYWRWLGHRLWLSQPGRALFTVALLVGVAEMTVARAHGDREGGAPLVVLTLLLLAVVTLDAVGRGVVTLVRRLVVDGGPRRRT