Scaffold Ga0335072_10000168

Overview

Basic Information

• Taxon OID: 3300032898
• Scaffold ID: Ga0335072_10000168
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 141160
• Total Scaffold Genes: 139
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 87 (62.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001276	Metagenome / Metatranscriptome	733	Y
F030177	Metagenome / Metatranscriptome	186	Y
F055093	Metagenome / Metatranscriptome	139	N
F073972	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335072_100001686	F001276	N/A	MTRHRVGRLGAVAALLATTLLALGGMAAGAGAYSAGCGEIPIVYGIPPWGFHTGPPLGATGSYARGHGDIDLDAGTVSGVICQERRFRGQPTRAITMTVEHHLVYHSHYATMWGYPGNIMKIVVRVQASDDPGCEVGTVGRATLFASYNGVRSDSVQFFFPAACGDQAHLYHGSQVNNQVPPL
Ga0335072_1000016865	F055093	N/A	MFRGWRCILTAFASLMIGVGAASALTTVTVKRCGYAARGFYGKDAIYPWHMSCARARTVLAGAINPHAKHINLTADGAATGDAGPVVIDGRWWVCGGRMGFYFCGYPYRPAYVSGTGGGTTWKGPFTEESDYNACSAGGTCGPREVVYLPH
Ga0335072_1000016895	F030177	AGG	VTRFFVAGVESEGARAEEVYNELRARSLLVAGCPANSRRIFKLSCRIDGRDREIEVGRPLSDAGEVVVAILDHGRFEDFCVHTDPAGESGPTRVGHPVYSVTEFS
Ga0335072_1000016896	F073972	GGA	MLTQADRAAERRRPKLEELQRQVEEGSPRIRKMTPDELLRCAAPAKARHK