Metagenome / Metatranscriptome Family F073972

Overview

Basic Information

• Family ID: F073972
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 120
• Average Sequence Length: 52 residues
• Representative Sequence: MLTQADRAAERRRVKLGEIQRQVKDGSLRIRKMTPEERKRYPAMPAKARRK
• Number of Associated Samples: 95
• Number of Associated Scaffolds: 120

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 34.17 %
• % of genes near scaffold ends (potentially truncated): 18.33 %
• % of genes from short scaffolds (< 2000 bps): 79.17 %
• Associated GOLD sequencing projects: 86
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (94.167 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.833 % of family members)
• Environment Ontology (ENVO): Unclassified (21.667 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (71.667 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Mixed
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 35.44%
  β-sheet: 0.00%
  Coil/Unstructured: 64.56%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF00487	FA_desaturase	13.33
PF01738	DLH	3.33
PF00563	EAL	2.50
PF04828	GFA	2.50
PF08240	ADH_N	2.50
PF00903	Glyoxalase	1.67
PF02634	FdhD-NarQ	1.67
PF10099	RskA	1.67
PF02630	SCO1-SenC	0.83
PF00561	Abhydrolase_1	0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	13.33
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	13.33
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	2.50
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	2.50
COG3791	Uncharacterized conserved protein	Function unknown [S]	2.50
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	2.50
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	2.50
COG1526	Formate dehydrogenase assembly factor FdhD, a sulfurtransferase	Energy production and conversion [C]	1.67
COG1918	Fe2+ transport protein FeoA	Inorganic ion transport and metabolism [P]	0.83
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.83

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.17 %
Unclassified	root	N/A	5.83 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.17 %
Unclassified	root	N/A	5.83 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.17 %
Unclassified	root	N/A	5.83 %

Level 4

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	51.67 %
Unclassified	root	N/A	5.83 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	50.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %
Unclassified	root	N/A	5.83 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	0.83 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	21.67 %
Unclassified	root	N/A	5.83 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.83 %

Level 7

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.83 %
Nitriliruptorales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales	0.83 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	19.17 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	1.67 %
Unclassified	root	N/A	5.83 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.83 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.83 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	2.50 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → environmental samples	0.83 %
Nitriliruptoraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae	0.83 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.83 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	1.67 %
Unclassified	root	N/A	5.83 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	1.67 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.83 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	2.50 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples	0.83 %
Nitriliruptor	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor	0.83 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.67 %
Unclassified	root	N/A	5.83 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	1.67 %
uncultured Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → environmental samples → uncultured Solirubrobacterales bacterium	0.83 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.83 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1.67 %
Nitriliruptor alkaliphilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	0.83 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.67 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1.67 %
Unclassified	root	N/A	5.83 %
unclassified Conexibacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter	0.83 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	0.83 %
uncultured Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → environmental samples → uncultured Solirubrobacterales bacterium	0.83 %

Level 11

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.83 %
Conexibacter sp. W3-3-2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. W3-3-2	0.83 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1.67 %
Nitriliruptor alkaliphilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	0.83 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.67 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1.67 %
Unclassified	root	N/A	5.83 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	0.83 %
uncultured Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → environmental samples → uncultured Solirubrobacterales bacterium	0.83 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001454|JGI20204J15135_1006457	All Organisms → cellular organisms → Bacteria	1136
3300002245|JGIcombinedJ26739_100639348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	942
3300003368|JGI26340J50214_10149041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	586
3300004080|Ga0062385_10177976	All Organisms → cellular organisms → Bacteria	1127
3300004080|Ga0062385_10209994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1058
3300004080|Ga0062385_10443386	All Organisms → cellular organisms → Bacteria	787
3300004082|Ga0062384_101055418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	584
3300004082|Ga0062384_101070792	Not Available	580
3300004091|Ga0062387_101342999	All Organisms → cellular organisms → Bacteria	566
3300004092|Ga0062389_100368807	All Organisms → cellular organisms → Bacteria	1541

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.50%
Host-Associated	Host-Associated	2.50%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	18.33%
Plants	Host-Associated → Plants	2.50%
Terrestrial	Environmental → Terrestrial	79.17%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	13.33%
Peat	Environmental → Terrestrial → Peat	13.33%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.50%
Sediment	Environmental → Aquatic → Sediment	3.33%
Soil	Environmental → Terrestrial → Soil	65.00%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.67%

Type

Habitat	Taxonomy	Distribution
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.67%
Loam	Environmental → Terrestrial → Soil → Loam	10.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	13.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.33%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.33%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.67%

Subtype

Habitat	Taxonomy	Distribution
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	12.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	13.33%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.33%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	13.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.50%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.83%

Habitat

Habitat	Taxonomy	Distribution
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	13.33%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.83%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	11.67%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.83%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	2.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.67%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.83%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.67%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	11.67%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.67%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.50%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.33%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.50%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.33%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001454	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012	Environmental
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20204J15135_10064572	3300001454	Arctic Peat Soil	MLTQADRAAARRSEKLEEIRSQVKDGSLTIRKMTAAERERYPQRPPRPSRGRGK*
JGIcombinedJ26739_1006393482	3300002245	Forest Soil	MSTQADRAAEKRRVKLEDVQRQVKEGSLTIREMTPQERKQFPPQPPDPRRKPRSR*
JGI26340J50214_101490411	3300003368	Bog Forest Soil	MRTQADRAAEKRRVKLEDVQRQLNEGSLTIRKMTAQERKRFPPPLPRPAKAPRR*
Ga0062385_101779762	3300004080	Bog Forest Soil	MLTQAERAAEKRRVRLKEIRRQVKDGSLTIRKMTVKERRRFPARPSKKSKGSRG*
Ga0062385_102099942	3300004080	Bog Forest Soil	MLTQADRAAEKRRAKLEDVQRQVEEGSLTIRKMTEEERKQFPPKDVAPRRKRQTR*
Ga0062385_104433862	3300004080	Bog Forest Soil	MPTRADRSADLRRANLEKIQRQVKDGSLTIRKMTPQERKRYPPVPSKKRNH*
Ga0062384_1010554182	3300004082	Bog Forest Soil	MPTRADRSADLRRANLEKIQRQVKDGSLTIRKMTPEERKRYPPVPSKKRSR*
Ga0062384_1010707921	3300004082	Bog Forest Soil	MLTQADRAAERRRVRLAEIRRQVKDGSLTIRKMTTKERKRFPPRSSKGSGR*
Ga0062387_1013429991	3300004091	Bog Forest Soil	MSTQADRSAELRRASLEKIQKQIKDGSLTVRKMTPAERKRFPPAPSKKRSR*
Ga0062389_1003688071	3300004092	Bog Forest Soil	MSTFAERAAEKRRVKLEDMKRQVKDGSLKIRKMTAQERKRFPPRPSKGSRT*
Ga0062389_1043349012	3300004092	Bog Forest Soil	MSTQADRSAELRRASLEKIQKQIKDGSLTVRKMTAAERKRFPPAPSKKRSR*
Ga0062386_1000270635	3300004152	Bog Forest Soil	RTRYPEYMITQAQRAAEKRRVKLEDVERQLREGSLKIRKMTPRERKLYPPAEKSRK*
Ga0062386_1001349773	3300004152	Bog Forest Soil	MPTQADRAAEQRRAKLEQIRKQVKDGSLTIRKMTADERRRFPPKPARASRK*
Ga0062388_1029401592	3300004635	Bog Forest Soil	FMSTQADRSAELRRASLEKIQKQIKDGSLTVRKMTAAERKRFPPAPSKKRSR*
Ga0070709_109913152	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VPTQADRAAERRRAKLEEIQRQVKDGSLTIRKMTPEERKRYPTQPAKQRRR*
Ga0066702_104199752	3300005575	Soil	MVTQADRAAERRRLKLEDVQRQVKEGSLTIRKMTREERKRYPALPAPARRKTRS*
Ga0070764_105809162	3300005712	Soil	MLTQADRAAEKRRVKLEDVQRQVKDGSLTIRKMTADERKRFPPQEADARRKSKSRSA*
Ga0070766_101891121	3300005921	Soil	MLTQADRAAEKRRVKLEDVQRQVKDGSLTIRKMTAAERKRFPPQAADARRKSKSRSA*
Ga0066790_103745151	3300005995	Soil	SLNVMITQADRAAERRRLKLEDVQRQLKEGSLTIRKMTTEERKRYPPQPAKARRNGR*
Ga0097691_10081886	3300006055	Arctic Peat Soil	MITQADRAAERRRLKLEDVQRQLKEGSLTIRKMTREERKRYPPVPAKARRNGR*
Ga0075017_1001046771	3300006059	Watersheds	VITQADRAAERRRLKLEEIERQVKDGSLRIRKMTPEEQQRYPVKAAKKRGK*
Ga0075017_1016468521	3300006059	Watersheds	MLTQADRAAERRRVKLEEIQRQVKEGSLKIRSMTPEERERYPAAEPAPAKKRRR*
Ga0075018_103862562	3300006172	Watersheds	MITQADRAAERRRVKLEDVQRQVKDGSLTIRKMTREERKRYPPLPAAKSRRDARR*
Ga0075525_100386761	3300006636	Arctic Peat Soil	MLTQADRAAERRRTKLEEIQLQVKDGSLTIRKMTPEERKRYPPKPSRVRRK*
Ga0075521_1000049810	3300006642	Arctic Peat Soil	MITQADRAAERRRLKLEDVQRQLKEGSLTIRKMTREERKRYPPVPVKARRNGR*
Ga0075521_100637162	3300006642	Arctic Peat Soil	MITQAERAAEKRRVKLEEIERQVKEGSLTIRKLTAKERKRFPPRPRKAPAKGARR*
Ga0102924_11114493	3300007982	Iron-Sulfur Acid Spring	MTSQADRAAERRSEKLKEIRRQVKDGSLKIRPMTAAERKRYPALPAKTSRK*
Ga0099829_114055172	3300009038	Vadose Zone Soil	MLTQADRAAERRRVKLEEIQRQVKEGSLKIRPMTSAERKRYPAVPAKARRK*
Ga0116224_105119362	3300009683	Peatlands Soil	MITQADRAAERRRVKLEEIQRQVKDGSLRIREMTPEERRRHPAVPAKARRK*
Ga0116217_105229612	3300009700	Peatlands Soil	MLTQADRAAERRRVKLEDVQRQLKDGSLKIRKRTAEERRKYPAAPA
Ga0126309_101440562	3300010039	Serpentine Soil	MTQKDRAEARRREKLEEIQSQVEDGSLTIRKMTPKERADHPPRPRPERGRRSGPRR*
Ga0074045_105225573	3300010341	Bog Forest Soil	MLTQADRAAERRRVKLEQIQRQLKDGSLRIRKMTPEERKRYPALPAKARRR*
Ga0134125_112670182	3300010371	Terrestrial Soil	MQTQADRAAERRRVKLELIRQQVDEGSLTIRKMTPKERKLYAVKPSKAPRR*
Ga0136449_1007925302	3300010379	Peatlands Soil	MLTQADRAAEKRRVKLEDVQRQLKDGSLTIRKMTPEERKRFPPKPPEARRKSRSA*
Ga0136449_1014001002	3300010379	Peatlands Soil	VLTQADRAAEKRRVKLEEIQRAVKDGSLKIRKMTAQERKSFPPQAAKASRAKAPRR*
Ga0126355_11110772	3300010855	Boreal Forest Soil	MMLTQADRAAERRRVKLEDVQRQVKEGSLKIRSMTAAERKRFPAPPANAKAKARRK*
Ga0126361_110038032	3300010876	Boreal Forest Soil	MITQAERAAERRLVKLGEIQRQVKDGSLRIRKMTPAERKRYPAMPAKARRK*
Ga0126356_108808073	3300010877	Boreal Forest Soil	ADRAAERRRLKLEDVQRQLKEGSLTIRKMTSEERKRYPPVPAKARRNGR*
Ga0137396_111492971	3300012918	Vadose Zone Soil	MLTQADRAAERRRARLEEIQRQVKEGSLMIRKMTPEERKRYPLKPSKERRK*
Ga0182012_103468424	3300014499	Bog	MLTQADRAAERRRVKLGELERQVKEGSLKIRKMTPEERLLYPVVPVKARRK*
Ga0182024_108323152	3300014501	Permafrost	MITQADRAAEQRRLKLVEMRRQVKDGSLTVRKMTPAERKRFPPKPAKARRR*
Ga0182024_111654232	3300014501	Permafrost	MSSQADRSADLRRASLEKIQRQIKDGSLTVRKMTPAERKRYPPGPSKKRSS*
Ga0181519_108441682	3300014658	Bog	MVTQAERAAARRKVILEEIERQVAGGSLTIRKMTPEERKRYPAVQTKKRRK*
Ga0167648_10486101	3300015171	Glacier Forefield Soil	MITQADRAAERRRLKLEDVQRQLKEGSLTIRKMTTEERKRYPPQPAKARRSGR*
Ga0182032_113229391	3300016357	Soil	VLTQAKRAADERRVKLEEVQRLVKDGSLKIRKMTVEERRRFPPRPSRRTRG
Ga0187803_1000143611	3300017934	Freshwater Sediment	MLTQADRAAERRRVKLGEIQRQVKDGSLRIRKMTPEERKRYPAMPAKARRK
Ga0193732_10023373	3300020012	Soil	VPTQADRAAERRRAKLEEIQRQVKEGSLTIRKMTPDERKRYPTQPAKQRRR
Ga0210395_100050405	3300020582	Soil	MLTQADRAAERRREKLEEIRSQVKDGSLTIRKMTLAERERYPQREQRPSRGRSK
Ga0210401_101760923	3300020583	Soil	MLTQADRAAERRREKLEEIRSQVKDGSLTIREMTPAERKRYPQRPSRPSRVGGR
Ga0179584_14552031	3300021151	Vadose Zone Soil	RMAELRRAKLEEVQRQVKDGSLMIRKMTPDERKRHPPRPSTKRNK
Ga0210408_100169192	3300021178	Soil	MLTQADRAAERRRAKLEEIQQQVKEGSLTIRKMTPEERKRYPPQPPRARRK
Ga0210396_100319965	3300021180	Soil	MITQAERAAENRRVKLAEIQRQVEQGSLTIRKLTAKERKQFPPRPPKAPAKAARR
Ga0210396_104016042	3300021180	Soil	MLTQADRAAERRRVKLEEIQSQLKDGSLRIRKMTSAERKRYPPKPARAGNR
Ga0210385_100035256	3300021402	Soil	MLTQADRAAERRRTKLEEIRSQVKDGSLTIRKMTPAERERYPQQPPRPSRGRRK
Ga0210385_115543021	3300021402	Soil	RGMLTQADRAAERRRTKLEEIRSQVKDGSLTIRKMTPAERERYPQRPPRPSRGRRK
Ga0210397_103194313	3300021403	Soil	MLTQADRAAERRREKLEEIRTQVKDGSLTIRKMTSAERKLYPPRPSRPGRTGGK
Ga0210389_100336944	3300021404	Soil	VLTQADRAAERRRAKLEQIQQQVKDGSLKIRKMTPEERKRYSTKPQAKRR
Ga0210387_1000001256	3300021405	Soil	MLTQADRAAERRREKLEEIRSQVKDGSLTIRKMTPAERERYPQQPPRPSRGRGK
Ga0210387_103195493	3300021405	Soil	MLTQADRAAERRRVKPEKFQRPVRDGSLRIRKMAAEEFWRSPAVAAKARRK
Ga0210383_100038795	3300021407	Soil	MSTQADRAAEKRRVKLEDVKRQVKDGSLTIREMTPAERKLFPPQPPDPRRKPRSR
Ga0210383_101443415	3300021407	Soil	MLTQADRAAERQRVKPGVFQRPARDGSLRLRKTTAEGRWRYPAVLAEARRK
Ga0210383_102159202	3300021407	Soil	MLTQADRAAERRREKLEEIRSQVKDGSLTIRKMTAAERERYPQRPPRPSRGRGK
Ga0210391_100409272	3300021433	Soil	MLSQADRAAERRRVKLEEFQRPAQDGSLRIRKMTAEERWRYPAVPAKARRK
Ga0210390_1000006721	3300021474	Soil	MLTQADRAAEKRRVKLQDVQRQVEDGSLTIRKMTEEERKRFPPKAVEPRHKRRGGPR
Ga0210402_101281953	3300021478	Soil	MLTQTDRAAERRRVKLGVFQRPVRDGSLRLRKMTAEGRWRYRAVLAKARRK
Ga0224712_106692601	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	RAAERRRVKLEDVQRQLKEGSLTIRKMTREERKRYPPVPVKARRNAR
Ga0212123_102410393	3300022557	Iron-Sulfur Acid Spring	MTSQADRAAERRSEKLKEIRRQVKDGSLKIRPMTAAERKRYPALPAKTSRK
Ga0208715_10431703	3300025482	Arctic Peat Soil	MITQAERAAEKRRVKLEEIERQVKEGSLTIRKLTAKERKRFPPRPRKAPAKGARR
Ga0208587_10080824	3300025484	Arctic Peat Soil	MITQADRAAERRRLKLEDVQRQLKEGSLTIRKMTREERKRYPPVPVKARRNGR
Ga0207928_10122842	3300025494	Arctic Peat Soil	MITQADRAAERRRLKLEDVQRQLKEGSLTIRKMTTEERKRYPPQPAKARRNGR
Ga0208848_10333682	3300025509	Arctic Peat Soil	MLTQADRAAERRRAKLEEIQSQLKDGSLTIRKMTAAERKRYAPRPARARARGK
Ga0208714_10019292	3300025527	Arctic Peat Soil	MITQAERAAEKRRVKLEEIERQVKEGSLTIRKLTAKERQRFPPRPRKAPAKGARR
Ga0207927_100042812	3300025579	Arctic Peat Soil	MATQADRAAEKRQAKLEDVQRQLKEGSLTIRKMTREERKRYPPVPATAKAKARRNGR
Ga0208355_10015286	3300025581	Arctic Peat Soil	MITQADRAAERRRLKLEDVQRQLKEGSLTIRKMTREERKRYPPVPAKARRNGR
Ga0209386_10336193	3300025582	Arctic Peat Soil	MLTQADRAAERRRTKLEEIQLQVKDGSLTIRKMTPEERKRYPPKPSRVRRK
Ga0208480_100039911	3300025633	Arctic Peat Soil	MLTQADRAAARRSEKLEEIRSQVKDGSLTIRKMTAAERERYPQRPPRPSRGRGK
Ga0208589_10091194	3300025634	Arctic Peat Soil	VLTQADRAAEQRRVKLEEIQAQVKGGSLTIRSMTPAERKRYPKKPSKARGK
Ga0209014_101406512	3300025857	Arctic Peat Soil	MATQADRAAEKRQAKLEDVQRQLKEGSLTIRKMTREERKRYPPVPVKARRNGR
Ga0209732_10531702	3300027117	Forest Soil	VLTQADRAAERRRAKLEQIQQQVKDGSLKIRKMTPAERKRYATKPPEKRR
Ga0209218_10098333	3300027505	Forest Soil	MLTQADRAAERRREKLEEIRSQVKDGSLTIRKMTAAERERYPQRSPRPSRGRSK
Ga0209219_11550472	3300027565	Forest Soil	VVITQADRAAERRREKLEQIRRQVADGSLKIRKMTPAERKRFPVAPAKARRK
Ga0209527_11551751	3300027583	Forest Soil	MAKQADRAAEKRRAKLEDVQRQVKDGSLTIRKMTAKERRRFPARPRKGPRA
Ga0209333_10438702	3300027676	Forest Soil	MLTQADRAAERRRAKLEEIRSQVQDGSLTIRKMTPAERERYPERPPRPSRGRRK
Ga0208696_12598672	3300027696	Peatlands Soil	MITQADRAAERRRVKLEEIQRQVKDGSLRIREMTPEERRRHPAVPAKARRK
Ga0209656_100091003	3300027812	Bog Forest Soil	MRTQADRAAEKRRVKLEDVQRQLNEGSLTIRKMTAQERKRFPPPLPRPAKAPRR
Ga0209656_100833191	3300027812	Bog Forest Soil	EYMITQAQRAAEKRRVKLEDVERQLREGSLKIRKMTPRERKLYPPAEKSRK
Ga0209169_107244892	3300027879	Soil	MLTQADRAAEKRRVKLEDVQRQVKDGSLTIRKMTADERKRFPPQEADARRKSKSRSA
Ga0209068_100738832	3300027894	Watersheds	MITQADRAAERRRVKLEDVQRQVKDGSLTIRKMTREERKRYPPLPAAKSRRDARR
Ga0209006_101855463	3300027908	Forest Soil	MLTQADRAAEQRRAKLENIQSQVKGGSLTIRNMTPAERERYPKRPPKARGK
Ga0209006_102516682	3300027908	Forest Soil	MLTQADRAAARRSEKLEEIRSQIKNGSLTIRKMTPAERERYPQPPSRPSRGRGK
Ga0265322_100544232	3300028654	Rhizosphere	MLTQADRAAARRSEKLEAIRSQVKEGSLTIRKMTTAERERYPQRAPRPSRGRGK
Ga0302234_101543663	3300028773	Palsa	FMSTQADRSAEIRRASLEKIQRQIKDGSLTVRKMTPAERKRFPPGPSKKRSR
Ga0302234_104449662	3300028773	Palsa	MLTQADRAAEKRRAKLEDVQRQVDEGSLTIRKMTEEERKLFPPKDVQ
Ga0302225_105711881	3300028780	Palsa	MSTQADRSAEIRRASLEKIQRQIKDGSLTVRKMTPAERKRFPPGPSKKRSR
Ga0265338_106721051	3300028800	Rhizosphere	DRAAARRSEKLEAIRSQVKEGSLTIRKMTTAERERYPQRAPRPSRGRGK
Ga0302154_102672151	3300028882	Bog	MLTQADRAAERRRVKLGELERQVKEGSLKIRKMTPEERLLYPVVPVKARRK
Ga0302154_104365282	3300028882	Bog	MLTQADRAAERRRVKLGELERQVKEGSLKIRKMTPEERQRYPVVPVKARRK
Ga0308309_108825171	3300028906	Soil	MLTQADRVAERRRTKLDEIQLRVKEGSLTIRTMTPEERKRYPP
Ga0311340_104651732	3300029943	Palsa	MLTQADRAAEQRRVKLEEIQRQLKAGSLTIRKMTREERKRFPPGPPRPAKGRRK
Ga0311340_115288982	3300029943	Palsa	MSTQADRSADLRRASLEKIERQIKDGSLKVRKMTPAERKRYPPGPSKKRSS
Ga0311338_106532632	3300030007	Palsa	MSTQADRSAETRRASLEKIQRQIKDGSLTVRKMTPAERKRYPPGPSKKRS
Ga0302177_102364902	3300030053	Palsa	MLTQADRAAEKRRAKLEDVQRQVDEGSLTIRKMTEEERKLFPPKDVQPRRKRPAR
Ga0311355_111365942	3300030580	Palsa	MLTQADRAAEKRRAKLEDVQRQVEEGSLTIRKMTEEERKQFPPKDVEPRRKRHTR
Ga0102770_110226612	3300030981	Soil	AERRRAKLEEIQRQVKDGSLTIRKMTPDERKRYPTQPAKQRQRRR
Ga0073997_120390245	3300030997	Soil	LSNAERAAERRSLKLNEIQRQVKDGSLKIRKMTRDERRRNPAVPRKARSK
Ga0302325_106385082	3300031234	Palsa	MVTQAERAAARRKVVLEEIERQVAGGSLTIRKMTPEERKRYPAVQTKKRGK
Ga0302325_112064813	3300031234	Palsa	MLTQADRAAERRRVKLEEVQERIKDGSLRIRKMTPEERKRYPAVPVKARRR
Ga0302325_124811641	3300031234	Palsa	MVTQAERAAERRLAKLEEVERQVKDGSLTIRKMTAAERKRYPARPAKARKTS
Ga0302325_127785921	3300031234	Palsa	MATQADRAAERRLAKLEEVERQVKEGSLTIRKMTAQERKRYPARPAKA
Ga0302325_133057132	3300031234	Palsa	MLTQADRAAERRRVKLEEVQQRVKDGSLRIRKMTPEERERYPAVPVKARRR
Ga0302326_127294023	3300031525	Palsa	STQADRSAELRRASLEKIQRQIKDGSLTVRKMTPAERKRFPPAASKKRSR
Ga0265313_103392133	3300031595	Rhizosphere	SEKLEAIRSQVKEGSLTIRKMTTAERERYPQRAPRPSRGRGK
Ga0310686_1073218412	3300031708	Soil	MLTQADRAAERRREKLEEIRSRVKDGSLTIRKMTPAERERYPARPARVRRK
Ga0307476_100182125	3300031715	Hardwood Forest Soil	MLTEADRAAERQRVKLGVFQRPVRDGSLRPRKMTAEGRWRYPAVLAKARHK
Ga0311301_105004182	3300032160	Peatlands Soil	MLTQADRAAEKRRVKLEDVQRQLKDGSLTIRKMTPEERKRFPPKPPEARRKSRSA
Ga0311301_110505292	3300032160	Peatlands Soil	VLTQADRAAEKRRVKLEEIQRAVKDGSLKIRKMTAQERKSFPPQAAKASRAKAPRR
Ga0348332_147314772	3300032515	Plant Litter	EKLEEIRSQVKDGSLTIREMTQAERERYPPQPSRPPRSSRGRGK
Ga0335074_104287451	3300032895	Soil	MLTQAHRAAERRRASLEKIERQVKDGSLTIRKMTAAERKRYPPIAPKGPGK
Ga0335072_1000016896	3300032898	Soil	MLTQADRAAERRRPKLEELQRQVEEGSPRIRKMTPDELLRCAAPAKARHK
Ga0335072_104955373	3300032898	Soil	MLTQADRAAEKRRVKLAEIEEQVKDGSLTIRAMTAAERKLYPPRPSAPRRKPAGRRR