NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10012716

Scaffold Ga0335074_10012716


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10012716 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11808
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013999Metagenome / Metatranscriptome266Y
F066643Metagenome / Metatranscriptome126Y
F085449Metagenome111N
F094175Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_100127161F094175GGAGGVIAWAIVMRLVGDHIHRVFLGFMPVSTVMTYGSAALLVVLIRWAKHGKPRGYLVAWIQHYFRPKAHNARCGAPTLPYLIEDEQ
Ga0335074_100127162F013999AGGAGGMFRVIRRKRRIQLYRFARAIGSGVGMLLLASPAFAQTGGDQVSSFLSNALSYAQGLGIFGAGFLVIWAVANIARERPSGKQWAGAGGALLLSSVLQLLRTFAG
Ga0335074_100127163F066643AGGAGMQKENNCRCVVCQVERSLLNSLNAQTARTHFQALARNHSILKRFSSPTDVIAKLHEHERVELVNHKAWNGILHALVDSIAGGAAEEIGQQLLLVAYAPAIHKVYREACQKFPGLCPEDIAQQALLCLLETARSTEMQSLNGHLPAALARRFRQSLFRWAMGELRHSLPLEEIASNIPETHARNFEEGVVLEQLLSKAQRMGILSASQCELVHKFHCEGFQPEELRENKDGPSAIALYRRIQRAVHRLRRTGATGSPRGGTIPPSQGENIQGGNSSQSKNVSSNAVDFSSEMCIRKSMKGNSPERSRPGPQLEPEVPSVAA
Ga0335074_100127167F085449GGAMASGASPSSLRLNSVDRQGRRIDPAVLAAAETIFPRALEYGTNLLGDTAVVTNTLEEVAATVSELIARRDSPGEPAPIRNLSGYVFRAFVRRVNRLKSKELAVLDAAIAGQTRAQRLADPSRQLEMKVLMDECLAQFDFTERDMCWRRLEGFTWDEIGPVHGLSGHAAEVRFRNAVRAVKAKLARSRKPLPSATDTAQNVGPKPAMGADDDKRKT

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