Scaffold Ga0335074_10000657

Overview

Basic Information

• Taxon OID: 3300032895
• Scaffold ID: Ga0335074_10000657
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48255
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (76.60%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000572	Metagenome / Metatranscriptome	1016	Y
F042765	Metagenome / Metatranscriptome	157	Y
F076757	Metagenome / Metatranscriptome	117	Y
F079911	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_1000065713	F000572	AGG	VPVKITYYAVVADERTIDNPYGLVRRLEHDDGPSDEGLRKDLSWAPTPAIVEWERGDFGPELVEVSHEQASKIVEYFHHRWGSSGDH
Ga0335074_1000065724	F000572	AGCAGG	VPGAITYYAVIADNRTIDNPYGLVRRLEHDDGPADEGMRRDFSWAFSPAIAEWEQGGRKQELVEVSHAQATKIIEFFRTQWGSYWEPLDP
Ga0335074_100006574	F076757	AGGAG	MTAGPAPVAPPPHPLYALTTYELSRYRRELEHALTALPGHAPVRGQLQQRLAEVQAEQHSRAQLSTGGRA
Ga0335074_100006575	F042765	GAG	MIRPPEPGGAAALAGFMAEYPCWSVFWDKAYGVWRAAEDDPDSALYIESRDLDTVLGYITAQA
Ga0335074_100006579	F079911	AGGAG	MTGSSPLGNHENRIVNGAGIGENVRVISYNVPVGDRPAGIKVRFKIRIAAGKRAREIDARQAKAIMEVLQWQRQQQTRQ