Scaffold Ga0335069

Basic Information
Taxon OID	3300032893 Open in IMG/M
Scaffold ID	Ga0335069_10005411 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032893 Open in IMG/M

Scaffold ID

Ga0335069_10005411 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18784
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (32.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

18784

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (32.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5008	Long. (^o)	-80.2398	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5008

Long. (^o)

-80.2398

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042481	Metagenome / Metatranscriptome	158	N
F045503	Metagenome / Metatranscriptome	152	N
F061699	Metagenome	131	N
F096530	Metagenome / Metatranscriptome	104	N
F098523	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335069_1000541113	F045503	N/A	MENMKVKLPKPAPDNQRVREIQQWLGAHGGSVANAYVVNAAALSELGAERGVIEKILWRVPREKPDMQLTAEAMMEMLTPKRLMREVRKQLKIDSKEGLAHTKAFEQSRRQLIASKVSAKTQNREAVIQEVESWFKSVLPEMRDTKVILRATELRLEAGRDIHPVLPPLNTTTEQVEQLNKREPGRVYIDKDGGELLLLKPGEQAMLDEKGLRIQNGAPAMPAPAMS
Ga0335069_1000541114	F098523	N/A	VDLEKLRDALQKARIVFTERPVPHVNPATVSLVVKRNGYILSVTPTVYYYGAVVEIRPNRGPRICFHWNKDPAELVAVMDLLVQVRQLTARLRPRWATRQLALITGRGPGSPVLVFQPACARFGIIPRPPSFNQLHKWAAVKEYGLGTSPKIIARDLVQLYQQNTPNRSWRSVVDDWNCKYSASFGHELTLSASYIYAWNGMRFLLDGDDLAMDVWTPVSSAAFPEIARLLESVQTVLGKAANENHLHKQPSV
Ga0335069_1000541117	F096530	N/A	MSSSQNGLVSFPPGTTTCCLGRNGIFTTVGIYVDSFDHKIILTPQHSRRQMARCTIELPNDPRVMLGLILELLKNSPGTREALQQEFAQTGAPSGSSVKEIQFIP
Ga0335069_100054112	F042481	GGA	MNRPLFAFLSTLTLSTFLVERYAGWYAPGCPVTEVVSLETLRVVFFGFFAVQMLLPFYHWARDPHFTTDTASGLALFVSIISAVVAFFIYNVPLAALNAIVRLAQFCMNS
Ga0335069_1000541122	F061699	N/A	MGHERAHCGVIVSTRKTRVFETAHDAARSIRGNWQEWRGAGVWFSSFHKPGTAFALPFDPDDYLWAGPATLKLDIPKGEETFCRKGHYRRGVRKYLGQLKRGERFPPLVLLYHEAWAWTLQDGNHRMEALVIHRASTFEAFLGKPKRPKPIDEF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335069_10005411

Overview

Ecosystem & Geography

Associated Families

Sequences