Scaffold Ga0335069

Basic Information
Taxon OID	3300032893 Open in IMG/M
Scaffold ID	Ga0335069_10000008 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032893 Open in IMG/M

Scaffold ID

Ga0335069_10000008 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	387728
Total Scaffold Genes	340 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	215 (63.24%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

387728

Total Scaffold Genes

340 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

215 (63.24%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5008	Long. (^o)	-80.2398	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5008

Long. (^o)

-80.2398

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000525	Metagenome / Metatranscriptome	1049	Y
F005269	Metagenome / Metatranscriptome	406	Y
F032775	Metagenome / Metatranscriptome	179	Y
F052109	Metagenome / Metatranscriptome	143	Y
F087285	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335069_10000008130	F052109	GGAG	MARPFAEVVRVKNVSRSGAVLLGVRAKLSAGELLDVQHGSQQARFRIAWASSGEAGIEALSSEPCIWDATLSKTLNPVGAG
Ga0335069_10000008188	F032775	N/A	MARRPTLETPDVLTEEELKQLRHNLAHLSTDGVRQFYERAYQDCRLMYDKVPSPCKIQTLVQVWKQLRKWRWG
Ga0335069_10000008212	F000525	AGCAG	MRTAKMLFLVALSFTSACSPRDFLTRRLAADLISAAEPFNAPQTFWLNTGIVSNKDFSSPESMVLQRRGWITGNEEKCPPGVEPAPCWDIVLSPHGVDTIRPLIASGSSGNGPIAIQAARRELIAITGISKAGSFADVEFTWHWVALNKVGEALYDSGVHYRSAVAFRSYDDGWRVVTSAVHGNQPLEEALRNAEPASP
Ga0335069_10000008281	F005269	GGA	LTINDSGGSYAIICYNIRTYRSAGVVAVVGGKRQAELEMKKFEQAQSSSDRHEGWRYLLDKTDLKAGTNPAEATLYRQAELEKRESKALREPDTSNFSSPHRQR
Ga0335069_10000008293	F000042	AGGAG	MKNFKFVVRVMRGAAHPPAYVQRVNPTPIQMTSNRKLALIMGKLTAEDAAKSVQTSRWTPELVPVRVSA
Ga0335069_10000008296	F087285	N/A	MVGGFWYSVSSFRLVSGFVVAAAAAVVLTQAARMRRYVWMTMFLLVVCLFNPVIPIPLSSYIFGMVSALTVLLFFFSMELLQPKRRLSIESITDRMTRSESL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335069_10000008

Overview

Ecosystem & Geography

Associated Families

Sequences