NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F087285

Metagenome / Metatranscriptome Family F087285

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F087285
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 114 residues
Representative Sequence MLTKVIKWSAIVALIAGALSRSLPNFGLLLQFVIVAAAVVVLTQAATMRRYVWMTLFLVTAGLFNPIFPVPFSRYIFGMVSTFAVLLFFFSLELLQPKPRLSIASITDRMPGSESL
Number of Associated Samples 75
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 86.36 %
% of genes near scaffold ends (potentially truncated) 20.91 %
% of genes from short scaffolds (< 2000 bps) 60.91 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (89.091 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds
(20.000 % of family members)
Environment Ontology (ENVO) Unclassified
(38.182 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(28.182 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.
1JGI12627J18819_100220815
2Ga0062389_1003245575
3Ga0062388_1000269644
4Ga0066679_104563561
5Ga0066684_106160871
6Ga0070708_1001867262
7Ga0070735_100027757
8Ga0070735_100316771
9Ga0070735_100653481
10Ga0070731_100715812
11Ga0070731_102251302
12Ga0070732_101379403
13Ga0066692_105406822
14Ga0074479_109539561
15Ga0075028_10000011031
16Ga0075028_1000866003
17Ga0075028_1004475021
18Ga0075028_1005308232
19Ga0075029_1000234312
20Ga0075029_1000262701
21Ga0075029_1000930633
22Ga0075029_1007383281
23Ga0075029_1010806341
24Ga0075017_10000019421
25Ga0075017_1005673301
26Ga0075019_109473442
27Ga0075015_1002080012
28Ga0075015_1003232681
29Ga0075015_1003911171
30Ga0075030_1000381533
31Ga0075021_101498913
32Ga0066660_100746895
33Ga0075433_100155001
34Ga0104326_1048132
35Ga0114129_105061793
36Ga0074045_104711371
37Ga0136449_1007172522
38Ga0137372_109721231
39Ga0137366_100138987
40Ga0181529_105377011
41Ga0181528_104555541
42Ga0181531_100059726
43Ga0182024_103446351
44Ga0182030_100058547
45Ga0187802_101699002
46Ga0187818_100104633
47Ga0187818_100647803
48Ga0187818_104676371
49Ga0187814_101241733
50Ga0187801_100500382
51Ga0187803_100032264
52Ga0187803_100308283
53Ga0187803_104149421
54Ga0187819_100140635
55Ga0187819_100594543
56Ga0187819_102930841
57Ga0187817_100778724
58Ga0181520_108755181
59Ga0187822_100786481
60Ga0187816_100253853
61Ga0187816_102759921
62Ga0187815_100510792
63Ga0066662_104405793
64Ga0066662_107279262
65Ga0210384_106139701
66Ga0213852_15372151
67Ga0213853_114625001
68Ga0224550_100000541
69Ga0209523_10095603
70Ga0209726_1000371915
71Ga0209580_100574074
72Ga0209068_100019979
73Ga0209068_103578411
74Ga0209698_1000383010
75Ga0209698_100403475
76Ga0209698_103117631
77Ga0209168_1000112613
78Ga0209168_100272712
79Ga0265322_101067512
80Ga0265338_107968581
81Ga0311336_118082511
82Ga0311337_111463222
83Ga0311353_112821232
84Ga0302324_1000123814
85Ga0307469_100272942
86Ga0307469_105121931
87Ga0307473_101836112
88Ga0307479_101587293
89Ga0311301_108562802
90Ga0311301_109347452
91Ga0307471_1000591855
92Ga0307471_1033553261
93Ga0335082_1000926211
94Ga0335082_101960834
95Ga0335079_107980711
96Ga0335079_121504871
97Ga0335078_101883615
98Ga0335080_105256211
99Ga0335080_108828862
100Ga0335070_1000030037
101Ga0335070_1000219824
102Ga0335070_100065764
103Ga0335069_10000008296
104Ga0335069_100828233
105Ga0335069_101523052
106Ga0335071_109845712
107Ga0335077_107243352
108Ga0326728_1000232452
109Ga0326726_102891812
110Ga0370484_0067382_56_406
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 59.03%    β-sheet: 0.00%    Coil/Unstructured: 40.97%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090100110MLTKVIKWSAIVALIAGALSRSLPNFGLLLQFVIVAAAVVVLTQAATMRRYVWMTLFLVTAGLFNPIFPVPFSRYIFGMVSTFAVLLFFFSLELLQPKPRLSIASITDRMPGSESLExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.32
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
89.1%10.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Watersheds
Bog Forest Soil
Bog
Freshwater Sediment
Groundwater
Sediment (Intertidal)
Watersheds
Soil
Vadose Zone Soil
Surface Soil
Peatlands Soil
Soil
Grasslands Soil
Soil
Hardwood Forest Soil
Soil
Untreated Peat Soil
Bog Forest Soil
Bog
Permafrost
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Fen
Palsa
Peat Soil
Populus Rhizosphere
Rhizosphere
3.6%15.5%20.0%8.2%3.6%5.5%13.6%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12627J18819_1002208153300001867Forest SoilMLTKVIKWSAIAALIGAALSRSLPGFGIILQFVVAVAAVVVLTQAAKMRRYLWMTLFLIVACLFNPVFPVPFSQYASSMATTFAALLFFFSLELLKPTPRLSIASITDRMPGSESL*
Ga0062389_10032455753300004092Bog Forest SoilAGALSRSLPNIGLVLQFLVVTAAVVVLTQAATMHRYVWMTLFMAIACLFNPVFPVPFSNYIFRMASSFAVLAFFFSLELLQPKPRLSIASITGRLPGSESL*
Ga0062388_10002696443300004635Bog Forest SoilMLTKIIKWAAIMALIAGALSRSLPNIGLVLQFLVVTAAVVVLTQAATMHRYVWMTLFMAIACLFNPVFPVPFSNYIFRMASSFAVLAFFFSLELLQPKPRLSIASITGRLPGSESL*
Ga0066679_1045635613300005176SoilMLTKVIKWTAILALIGGTLSRSLPAIELVLQFAIVAAAVIVLTQAATMRRYVWMSLFFLVACLFNPVFPVPFSNYVSGLATTFAALLFFISLQFLQPKPRMSIASITDRMPGSESL*
Ga0066684_1061608713300005179SoilMLTKVIKWTAILALIGGTLSRSLPAMELVLQFAIVAAAVIVLTQAATMRRYVWMSLFFLVACLFNPVFPVPFSNYVSGLATTFAALLFFISLQFLQPKPRMSIAS
Ga0070708_10018672623300005445Corn, Switchgrass And Miscanthus RhizosphereMLCGPRDQERWNQLLTKIIKWTAIAALIGGGFGYSVASYRLLSQFVVVAAAAVVLTQAAKMRRYVWMTLFLSVVCLFNPVVPVPFSSYIFGIVSMFAVFLFFFSLELLQPKRRLSIASITDRMPGSESL*
Ga0070735_1000277573300005534Surface SoilMLTKSIKWAAIAALIGGAGLSRSLPTVTLLLQFVVVGSAALVLTQAAAMRRYVWMALFLLVACLFNPVFPLSFSSSIFNAVTTLAILLFFFSLELLRPKPRLSMASITHRMPGSESL*
Ga0070735_1003167713300005534Surface SoilMFTKSVKWTAIAALIGGGLSRSLPVVALLSQFVVAVSAAIVLTQAATMRRYVWMILFLVVTCLFNPVFPLAFTTNTLGLATTFSVLLFFFSLEFLQMKPRLSIASITDRMPGSESL*
Ga0070735_1006534813300005534Surface SoilMFTKSVKWTAIAALIGGGLSRSLPVVALLSQFVVAASAAIVLAQAATMRRYVWMILFLVVACLFNPVFPLAFTTNTLGLATTFSVLLFFFSLEFLQMKPRLSIASITDRMPGSE
Ga0070731_1007158123300005538Surface SoilMLTKSIKWAAIAALIGGASLSRSLPTVTLLLQFVVVGSAALVLTQAAAMRRYVWMALFLLVACLFNPVFPLSFSSSIFNAVTTLAILLFFFSLELLRPKPRLSMASITHRMPGSESL*
Ga0070731_1022513023300005538Surface SoilMFTKSVKWTAIAALIGGGLSRSLPVVALLSQFVVAVSAAIVLTQAATMRRYVWMILFLVVACLFNPVFPLVFTTNTLGLATTFSVLLFFFSLEFLQMKPRLSIASITDRMPGSESL*
Ga0070732_1013794033300005542Surface SoilMLTKVVKWSAIAALIGGAIFRSAPGYALLLRFVVVTASMVVLTQAATIRRYVWMILFLVVAGLFNPVFPLSFSSYISSIISTFALFLFFFSLELLKPESRRATITDRA*
Ga0066692_1054068223300005555SoilMLTKVIKWSAIAALVGSALSRSLPDFRLVLLFVVAAASVVVLTQAAAMRRYVWMTLFLVVAGLFNPVFPVPFSNYNSAMVSTFAALLFFISLELLKPKPRLSIASITDRMPGSESL*
Ga0074479_1095395613300005829Sediment (Intertidal)IGGALSRSTPYFAPVLQFVVTAAAVIVLTQAATTRRYMWVALFLGVACVFNPFFPVPLFRYVFGVATMLSLLLFIFSLELLKPQPRLSIASITDRMPGSESL*
Ga0075028_100000110313300006050WatershedsMLTRAIKWTAIAALIGGALSRSSPYLAPVLQFVVTAAAVVVLTQAATTRRYLWVALFLAVACVFNPFFPVPLYRYVFGVATMLSLLLFFFSLELLKPQHRLSIASITDRMPGSESL*
Ga0075028_10008660033300006050WatershedsMSLLTRIIKWGAIAALIGSAFSRSVPDIGLLLRFAVVVAAAVVLMQAASMRRYVWMALFLAVVCLFNPVFPVPFSTYMSGIASAFAILLFFFSLELLQPKPRLSIASITDRMPGSESL*
Ga0075028_10044750213300006050WatershedsLGQGLTAERNTTLGGKNSMFTRIVKWSAMAALIGGLFSRSVPSFGLVLQFAIVSAAGVVLTQAATMRRYVWMGLFVVVVCLFNPVFPVPFSSYMFAIVTAFALLLFFFSVELLQPKPRLSIASITDRMPGSESL*
Ga0075028_10053082323300006050WatershedsMAGKTNPERDKPMLTRIIKWTAIAALAGGVLLRSSPYLGPVLQFVVTAAAVVVLTQAAATRRFVWMTLFLVVACVFNPFFPVPLVRYVFAVATMLSLLLFFFSLEQLKSQPRLSIA
Ga0075029_10002343123300006052WatershedsLGLASSYALLTQFVVVTAAAVVLTQAAKMRRYVWMILFLLVVFLFNPVVPVPFSNYIFGIVSVSAVLLFFFSLELLRPKRRLSIASITDRMPGSEAL*
Ga0075029_10002627013300006052WatershedsMFTRIVKWSAMAALIGGLFSRSVPSFGLVLQFAIVSAAGVVLTQAATMRRYVWMGLFVVVVCLFNPVFPVPFSSYMFAIVTAFALLLFFFSVELLQPKPRLSIASITDRMPG
Ga0075029_10009306333300006052WatershedsAIAALIGGILSRPWPDFGLALRFVVVAAAVVVLVQAVTMGRYVWMALFLVVAALFNPFFPVPFSNYVFGVASTSAVLLFFFSLRRLQPRPVLSIASITGRMPGSESL*
Ga0075029_10073832813300006052WatershedsLLTKIIKWSAIAALMGGGFWYSVSSYRLLSQFVVVAAAAIVLTQAARMRRYVWMTLFLLVVCLFNPVVPVPFSTYIFGIVSAFAVLLFFFSLELLRPKRKLSIASLTDRMPGSESL*
Ga0075029_10108063413300006052WatershedsMLTRAIKWTAIAALIGGALSRSSPYLAPVLQFVVTAAAVVVLTQAATTRRYLWVALFLAVACVFNPFFPVPLYRYVFGVATMLSLLLFFFSLELLKPQ
Ga0075017_100000194213300006059WatershedsMFTRIVKWSAMAALIGGLFSRSVPSFGLVLQFAIVSAAGVVLTQAATMRRYVWMGLFVVVVCLFNPVFPVPFSSYMFAIVTAFALLLFFFSVELLQPKPRLSIASITDRMPGSESL*
Ga0075017_10056733013300006059WatershedsESGLDERLMAGNPRKQRGRTTMLTRAIKWTAIAALIGGALSRSSPYLAPVLQFVVTAAAVVVLTQAATTRRYLWVALFLAVACVFNPFFPVPLYRYVFGVATMLSLLLFFFSLELLKPQHRLSIASITDRMPGSESL*
Ga0075019_1094734423300006086WatershedsQTSRPGWRGLGQGLTAERNTTLGGKNSMFTRIVKWSAMAALIGGLFSRSVPSFGLVLQFAIVSAAGVVLTQAATMRRYVWMGLFVVVVCLFNPVFPVPFSSYMFAIVTAFALLLFFFSVELLQPKPRLSIASITDRMPGSESL*
Ga0075015_10020800123300006102WatershedsMSMLTRIIKWGAIAALIGSAFSRSVPDLGPVLRFAVVAAAAVVLMQAATMRRYVWMTLFLAVVCLFNPVLPVPFSAYISGIVSAFAVLLFFFSLELLQPKPKLSIASITDRMPGSQSL*
Ga0075015_10032326813300006102WatershedsMSMLTKIVKWGAIAALIGTAFAQSSPDIGLVLRFAVVAAAAVVLTQAATMRRYVWMTLFLAVACLFNPVFPVPFSTYMSGVASAFAVLLFFFSLELLQPKPTLSIASITDRMPGRESL*
Ga0075015_10039111713300006102WatershedsVLTRIIKWSAIAALIGGGFLYSDYSYRLLSQFVVVAAAAVVLTQAAKMRRYVWMTLFLLVVFLFNPVVPVPFSSYIFGIVSVFAVLLFFFSLELLRPKSRLSIASITDRMPGSESL*
Ga0075030_10003815333300006162WatershedsLLTRIIKWSAIAALMGGGFLGLASSYALLTQFVVVTAAAVVLTQAAKMRRYVWMILFLLVVFLFNPVVPVPFSNYIFGIVSVSAVLLFFFSLELLRPKRRLSIASITDRMPGSEAL*
Ga0075021_1014989133300006354WatershedsMSMLTKIVKWGAIAALIGTAFAQSLPDIGLVLRFAVVAAAAVVLTQAATMRRYVWMTLFLAVACLFNPVFPIPFSTYMSGIASAFAVLLFFFSLELLQPKPTLSIASITDRMPGRESL*
Ga0066660_1007468953300006800SoilMLTKVIKWTAILALIGGTLSRSLPAMELVLQFAIVAAAVIVLTQAATMRRYVWMSLFFLVACLFNPVFPVPFSNYVSGLATTFAALLFFISLQFLQPKPRMSIASITDRMPGSESL*
Ga0075433_1001550013300006852Populus RhizosphereMVTKIIKWSAIAALIEGAFVRSLPSYGLLTQLVVVAAAAVVLTQAATMRRYIWMTLFLVVACVLNPVFPLAFSNYMFGMVSTLAVLLFFFSLDLLKPRLSIALITDHMPGRESL*
Ga0104326_10481323300007740SoilMLTRIVKWSAITALIGGVFLHSVTGFALLLQFVVVAASVVVLTQAATMHRYVWMALFFVLACLFNFVFPVPLSDYIFATASIFAAFLFFFSLELVPKPQLSIASITELVPGSESL*
Ga0114129_1050617933300009147Populus RhizosphereMVTKIIKWSAIAALIEGAFVRSLPSYGLLTQLVVVAAAAVVLTQAATMRRYIWMTLFLVVACVLNPVFPLAFSNYMFGMVSTLAVLLFFFSLDLLKPRLSMALITDHMPGRESL*
Ga0074045_1047113713300010341Bog Forest SoilIGGGFGYSVYSYRLLSQFVVMAAAAVVLTQAAKMRRYVWMSLFLLVVFLFNPVVPIPFSSYIFGVVSIFTVLLFFFSLELMRPKSRLSVSLGH*
Ga0136449_10071725223300010379Peatlands SoilMARVREIRNKESMLTRITKWVAIVALIAGALARSSPNIGLILQFLVVAAAMVVLTQAATMRRYVWMTLFVAIACLFNPVFPLPFSNYVFRMVSSFAVLAFFFSLELLQPKPRLSMASITNRMPGSESL*
Ga0137372_1097212313300012350Vadose Zone SoilMLTKAVKWSAIAALIGGAFLRSVSSYGLLSQFVVVAAAVVVLTQAASMRRYVWMTLFLLVAGLFNPVFPIPFSNYISNIVGAFAVLLFFFSLELLQPKTRLSIASITDRMPGSESL
Ga0137366_1001389873300012354Vadose Zone SoilMLTKAVKWSAIAVLIGGAFLRSVSSYGLLSQFVVVAAAVVVLTQAASMRRYVWMTLFLLVAGLFNPVFPIPFSNYISNIVGAFAVLLFFFSLELLQPKTRLSIASITDRMPGSESL*
Ga0181529_1053770113300014161BogMLTKIIKWCAIAALMGGGFLGMASNYALLTQFVVVAAAAVVLTQAAKMRRYVWMTFFLVVICLFNPVVPVPFSNYIFGIVSVSAVLLFFFSLELLRPKRRLAIASISNRMPGS
Ga0181528_1045555413300014167BogMLTKIIKWCAIAALMGGGFLGMASNYALLTQFVVVAAAAVVLTQAAKMRRYVWMTFFLVVICLFNPVVPVPFSNYIFGIVSVSAVLLFFFSLELLRPKRRLAIAS
Ga0181531_1000597263300014169BogMLTKIIKWCAIAALMGGGFLGMASNYALLTQFVVVAAAAVVLTQAAKMRRYVWMTFFLVVICLFNPVVPVPFSNYIFGIVSVSAVLLFFFSLELLRPKRRLAIASISNRMPGSDSR*
Ga0182024_1034463513300014501PermafrostVALLTKIIKWSAIAALIGGEFLRSVSSYGLLSQFVVVAAAAVVLTQAATMRRYVWMTLFLVVACLFNPVFPVPFSNFIPGVVTTFAVLLFFFSLELLQPKPRLSIASITDRMPGSESL*
Ga0182030_1000585473300014838BogVALIGGGVEYSVFSYRLLSQFVVVAAAAVVLTQAARMRQYVWMTLFLLVVCLFNPVVPVPFSSYIFGVVSIFAVLLFFFSLELLQPKRKLSIASISNRRPGSKSL*
Ga0187802_1016990023300017822Freshwater SedimentLLTKIIKWTAIAALIGGGFLYSDYSYRLLSQFVVAAAAAVVLTQAAKMRRYVWMTLFLSVVCLFNPVVPVPFPSYIFGIVSIFAVLLFFFSLELLRPKSRLSIASITDRMPGSKSL
Ga0187818_1001046333300017823Freshwater SedimentMLTKVIKWSAIVALIAGALSRSLPNFGLLLQFVIVAAAVVVLTQAATMRRYVWMTLFLVTAGLFNPIFPVPFSRYIFGMVSTFAVLLFFFSLELLQPKPRLSIASITDRMPGSESL
Ga0187818_1006478033300017823Freshwater SedimentMSRSLPATGLVLQFVVAAAAVVVLTQAATMSRYVWMTLFLVVACLFNPVFPVPLSNYIFGMVTSLAVLLFFFSLQLLQPKPRLSIASITDRMPGSESL
Ga0187818_1046763713300017823Freshwater SedimentLLTKIIKWSAIAALMGGGCLGLTSSYALLTQFVVVTAAAVVFTQAAKMRRYVWMTLFLVVVCLFNPVVPIPFSNYIFGIVSIFSVLLFFFSLELLQPKRRLSIASITDRMPGSESL
Ga0187814_1012417333300017932Freshwater SedimentMLTKVIKWSAIAALIGGAMSRSLPATGLVLQFVVAAAAVVVLTQAATMSRYVWMTLFLVVACLFNPVFPVPLSNYIFGMATSLAVLLFFFSLQLLQPKPRLSIASITDRMPGSESL
Ga0187801_1005003823300017933Freshwater SedimentMLTKVIKWSAIVALIAGALSRSLPNFGLLLQFVTVAAAVVVLTQAATMRRYVWMTLFLVTAGLFNPIFPVPFSRYIFGMVSTFAVLLFFFSLELL
Ga0187803_1000322643300017934Freshwater SedimentMFTKVIKWSAIAALIGGAFLRSAPDYAFLLRFVVAAASIVVLTQAATMRRYVWMILFLVVAGLFNPVFPVPFSRYISSIVSTFALFLFFFSLELLKPEPRLASIADSARKGEPL
Ga0187803_1003082833300017934Freshwater SedimentMFTKVIKWSAIAALIGGAFSRSWPDFRMLLQFVVVAAAVVVLTQAAIMRRYVWMSLFVVVAGLFNPVFSVPFSNYISGMVSTFAVLLFFFSLELLQPKPRLSIASITHCMPGSESL
Ga0187803_1041494213300017934Freshwater SedimentMLTRIIKWSAIAALIGGAFVRSVSSYGLLSQFVIAAAAVVVLAQAGRMRRYVWMTLFLVVVCLFNPVIPVPFSSYTFGIVTVFAMLLFFFSLELLQPKRRLSIASITDRMPGSESL
Ga0187819_1001406353300017943Freshwater SedimentMLTKVIKWSAIVALIAGALSRSLPNFGLLLQFVTVAAAVVVLTQAATMRRYVWMTLFLVTAGLFNPIFPVPFSRYIFGMVSTFAVLLFFFSLELLQPKPRLSIASITDRMPGSESL
Ga0187819_1005945433300017943Freshwater SedimentLLTKIIKWSAIAALMGGGCLGLTSSYALLTQFVVVTAAAVVFTQAAKMRRYVWMTLFLVVVCLFNPVVPIPFSSYIFGIVSIFSVLLFFFSLELLQPKRRLSIASITDRMPGSESLWCHFQREAQS
Ga0187819_1029308413300017943Freshwater SedimentMLTKVIKWSAIAALIGGAMSRSLPATGLVLQFVVAVAAVVVLTQAATMSRYVWMTLFLVVACLFNPVFPVPLSNYIFGMVTSLAVLLFFFSLQLLQPKPRLSIASITDRMPGSESL
Ga0187817_1007787243300017955Freshwater SedimentMLTRVIKWSAIAALIGGALSRSVPNLGMGLQFVVVAAAGFVLTQAATMGRYVWMTLFILVACLLNPVFPLPFSNYIFEIVSSFALLLFFFSLELLQP
Ga0181520_1087551813300017988BogMLTKVTKWSAMAALIGVALSRSLPGVTVPFQLAVTAAAIVVLIQAVTMRRYVGMSLFFMVACLFNPVFPVRLSSYMSGWATTFAVLLFFFSLELLKPRPTLAIVSSTDRMSGSSSR
Ga0187822_1007864813300017994Freshwater SedimentLIGIALVRSFPNFGVPLQFVVTAAALIVLTQAATMRRYVWMILFLTVACLFNPAFPVRLSNYVADLATAFAALLFFFSLELLKPKSRLSIASITDRMSGSESL
Ga0187816_1002538533300017995Freshwater SedimentMLTRVIKWSAIAALIGGALSRSVPNLGMGLQFVVVAAAGFVLTQAATMGRYVWMTLFILVACLLNPVFPLPFSNYIFEIVSSFALLLFFFSLELLQPKPRLSIASITDRMPGSESL
Ga0187816_1027599213300017995Freshwater SedimentMLTKVIKWSAIVALIAGALSRSLPNFGLLLQFVTVAAAVVVLTQAATMRRYVWMTLFLVTAGLFNPIFPVPFSRYIFGMVSTFAVLLFFFSLELLQ
Ga0187815_1005107923300018001Freshwater SedimentMLTKVIKCSAIVALIAGALSRSLPNFGLLLQFVTVAAAVVVLTQAATMRRYVWMTLFLVTAGLFNPIFPVPFSRYIFGMVSTFAVLLFFFSLELLQPKPRLSIASITDRMPGSESL
Ga0066662_1044057933300018468Grasslands SoilMLTKVIKWSAIAALVGSALSRSLPDFRLVLLFVVAAASVVVLTQAAAMRRYVWMTLFLVVAGLFNPVFPVPFSNYNSAIVSTFAALLFFISLELLKPKPRLSIASITDRMPGSESL
Ga0066662_1072792623300018468Grasslands SoilMLTKVIKWTAILALIGGTLSRSLPAIELVLQFAIVAAAVIVLTQAATMRRYVWMSLFFLVACLFNPVFPVPFSNYVSGLATTFAALLFFISLQFLQPKPRMSIASITDRMPGSESL
Ga0210384_1061397013300021432SoilMLTKVIKWSAIAALIGGAIFRSAPGYALLLRFVVVAASIVVLTQAATVRRYVWMILFLVVAGLFNPVFPVSFSSYISSIVSTFALFLFFFSLELLKPESRRATITDHARGGGSL
Ga0213852_153721513300021858WatershedsMLTRAIKWTAIAALIGGALSRSSPYLAPVLQFVVTAAAVVVLTQAATTRRYLWVALFLAVACVFNPFFPVPLYRYVFGVATMLSLLLFFFSLELLKPQHRLSIASITDRLPGSESL
Ga0213853_1146250013300021861WatershedsMLTRAIKWTAIAALIGGALSRSSPYLAPVLQFVVTAAAVVVLTQAATTRRYLWVALFLAVACVFNPFFPVPLYRYVFGVATMLSLLLFFFSLELLKPQHRLSIASITDRMPGSESL
Ga0224550_1000005413300022873SoilMLTKVIKWSAIAALLGGAAFRTTRAYALPLSVVVVAAAIVVLSQAASMRRYVWLILFLVVACLFNPVFPVPFSNYAFGIASTFAAFLFFFSLELLKPKIRV
Ga0209523_100956033300027548Forest SoilMLTKVIKWSAIAALIGVALSRSLPGFGIILQFVVAVAAVVVLTQAAKMRRYLWMTLFLIVACLFNPVFPVPFSQYASSMATTFAALLFFFSLELLKPTPRLSIASITDRMPGSESL
Ga0209726_10003719153300027815GroundwaterMLTKVIKWSAIAALIAGAFLRSASDYVLLSQFVVVAAALVVLTQAATMRRYVWMSLFLVVASLFNPVVPIPFSNYVFGIVSCFALLLFFFSLELLKPNPRLSIASITDRMPGSESL
Ga0209580_1005740743300027842Surface SoilMLTKVVKWSAIAALIGGAIFRSAPGYALLLRFVVVTASMVVLTQAATIRRYVWMILFLVVAGLFNPVFPLSFSSYISSIISTFALFLFFFSLELLKPESRRATITDRA
Ga0209068_1000199793300027894WatershedsMSLLTRIIKWGAIAALIGSAFSRSVPDIGLLLRFAVVVAAAVVLMQAASMRRYVWMALFLAVVCLFNPVFPVPFSTYMSGIASAFAILLFFFSLELLQPKPRLSIASITDRMPGSESL
Ga0209068_1035784113300027894WatershedsMSMLTKIVKWGAIAALIGTAFAQSLPDIGLVLRFAVVAAAAVVLTQAATMRRYVWMTLFLAVACLFNPVFPIPFSTYMSGIASAFAVLLFFFSLELLQPKPTLSIASITDRMPGRESL
Ga0209698_10003830103300027911WatershedsMFTRIVKWSAMAALIGGLFSRSVPSFGLVLQFAIVSAAGVVLTQAATMRRYVWMGLFVVVVCLFNPVFPVPFSSYMFAIVTAFALLLFFFSVELLQPKPRLSIASITDRMPGSESL
Ga0209698_1004034753300027911WatershedsLLTRIIKWSAIAALMGGGFLGLASSYALLTQFVVVTAAAVVLTQAAKMRRYVWMILFLLVVFLFNPVVPVPFSNYIFGIVSVSAVLLFFFSLELLRPKRRLSIASITDRMPGSEAL
Ga0209698_1031176313300027911WatershedsVLTRIIKWSAIAALIGGGFLYSDYSYRLLSQFVVVAAAAVVLTQAAKMRRYVWMTLFLLVVFLFNPVVPVPFSSYIFGIVSVFAVLLFFFSLELLRPKSRLSIASITDRMPGSESL
Ga0209168_10001126133300027986Surface SoilMLTKSIKWAAIAALIGGAGLSRSLPTVTLLLQFVVVGSAALVLTQAAAMRRYVWMALFLLVACLFNPVFPLSFSSSIFNAVTTLAILLFFFSLELLRPKPRLSMASITHRMPGSESL
Ga0209168_1002727123300027986Surface SoilMFTKSVKWTAIAALIGGGLSRSLPVVALLSQFVVAASAAIVLAQAATMRRYVWMILFLVVACLFNPVFPLAFTTNTLGLATTFSVLLFFFSLEFLQMKPRLSIASITDRMPGSESL
Ga0265322_1010675123300028654RhizosphereMLTKVIKWSAIAALIGSALSRSLPDIRLTLQLAVAAAAVIVLTQAAIMHRYIWMSLFVLVACLFNPVFPIPFSIYISGVVTMMAGLLFFFSLELLQPRPRLSIASITDRGREASRYEAQ
Ga0265338_1079685813300028800RhizosphereMLTKVIKWSAIVALIGFALSRSMPGFGLVLLFVIAAAAVVVLSQAATMHRYVWMALFIIVAGLFNPFFPVPFSSYVSGVVTMLAILLFFFSLGLLQPKPRLSVASITDTTPGSESL
Ga0311336_1180825113300029990FenFALSRSMPGLGLVLLFVVAAAAVVVLTQAATMHRYVWMALFIIVACLFNPVFPIPFSTYVSGVVTMLAILLFFFSLGLLQSKPRLSVASITDTTPGGESL
Ga0311337_1114632223300030000FenMLTKVIKWSAIVALVGFALSRSMPGLGLVLLFVVAAAAVVVLTQAATMHRYVWMALFIIVACLFNPVFPIPFSTYVSGVVTMLAILLFFFSLGLLQSKPRLSVASITDTTPGGESL
Ga0311353_1128212323300030399PalsaMLTKVIKWSAIAALLGGAAFRTTRAYALPLSVVVVAAAIVVLSQAASMRRYVWLILFLVVACLFNPVFPVPFSNYAFGIASTFAAFLFFFSLELLKPKIRVI
Ga0302324_10001238143300031236PalsaVGQGLRSGEHESVRSMLTKVIKWSAIAALLGGAAFRTTRAYALPLSVVVVAAAIVVLSQAASMRRYVWLILFLVVACLFNPVFPVPFSNYAFGIASTFAAFLFFFSLELLKPKIRVI
Ga0307469_1002729423300031720Hardwood Forest SoilMLTKVIKWSAIAALIGGAIFGSAPGYALLLRFVVVTASIVVVTQAATIRRYVWMILFLVVAGLFNPVFPVPFSIYISSIVTTFALFLFFLSLELLKPESRRATIIDRAQEGRSL
Ga0307469_1051219313300031720Hardwood Forest SoilLMLTKVIKWSAIAALIGGAIFRSAPGYALLLRFVVVAASIVVLTQAATVRRYVWMILFLVVAGLFNPVFPVSFSSYISSIVSTFALFLFFFSLELLKPESRRATITDHARGGGSL
Ga0307473_1018361123300031820Hardwood Forest SoilMLTKVIKWSAIAALIGAALSRSLPGFGIILQFVVAVAAVVVLTQAAKMRRYLWMTLFLIVACLFNPVFPVPFSQYASSMATTFAALLFFFSLELLKPTPRLSIASITDRMPGSESL
Ga0307479_1015872933300031962Hardwood Forest SoilMLTKVIKWSAIVALIGVALSRSLPGFGVVLQFVVAVAAVVVLTQAAKMHRYLWMTLFLIVACLFNPVFPVPFSNYMSSMATTFAALLFFFSLELLKPTPRLSIASITDRMPGSESL
Ga0311301_1085628023300032160Peatlands SoilMVGETRIGPTIEYETRGGGIKLLTKIIKWSAIAALIGGGFGYSVYSYRLLSQFVVVAAAAVVLTQAAKMRRYVWMTLFLLVVFLFNPVVPVPFSSYIFGVVSIFAVLLFFFSLELLRPKSRLSIASITDRMPGSESL
Ga0311301_1093474523300032160Peatlands SoilMARVREIRNKESMLTRITKWVAIVALIAGALARSSPNIGLILQFLVVAAAMVVLTQAATMRRYVWMTLFVAIACLFNPVFPLPFSNYVFRMVSSFAVLAFFFSLELLQPKPRLSMASITNRMPGSESL
Ga0307471_10005918553300032180Hardwood Forest SoilMLTKVIKWSAIAALIGGAIFRSAPGYALLLRFVVVAASIVVLTQAATVRRYLWMILFLVVAGLFNPVFPVSFSSYISSIVSTFALFLFFFSLELLKPESRRATITDHARGGGSL
Ga0307471_10335532613300032180Hardwood Forest SoilMLTKVIKWSAIAALIGGAIFGSAPGYALLLRFVVVTASIVVLTQAATIRRYVWMILFLVVAGLFNPVFPVPFSSYVSGIVSTFALFLFFFSLELLKPESRRATITDRGGSL
Ga0335082_10009262113300032782SoilVALMGGGFWYSVSSFRLLSQFVVAAAAAIVLTQAARMRRYIWMALFLLVACLFNPVVPIPFSSYIFGIVSAFAVLLFFFSVELLQPKRRLSIASITDRVPGSESL
Ga0335082_1019608343300032782SoilMPTKIIKWSAIAALIGGALARSLPNLGLALQFVVVAAAGVVLTQAATMRRYVWMTLFVAVACLFNPVFPVAFSNYTFAMVSSFAVLLFFFSLELLQPKPKLSIASITDRMPGSESL
Ga0335079_1079807113300032783SoilMLTKVIKWTAIVALMGGALVGSFPDIEVVLQFVVVAAAVVVLTQAATMRRYVWAALFLLVALLFNPVLPIPFPVYVSRLVQGLTLSLFFFSLELLKPQPRLSIASITDRMPGSEAL
Ga0335079_1215048713300032783SoilMLTKAIKWTAIAALIGGAFARSSPNLGLGLQFVVVAAAGVSLTQAAIMRRFTWMTLFVTVACLFNPVFPITFSSYTFAMASSFALLLFFFSLELLQPRPKLSIASITDRMPGSESL
Ga0335078_1018836153300032805SoilMLTKIIKVTAIVALMAGGFWYSVSSFRLLSQFVVAAAAAIVLTQAARMRRYVWMTMFLLVVCLFNPVIPIPFSSYIFAVVSAFAVLLFFFSLELLVAAETEVVD
Ga0335080_1052562113300032828SoilMLTKIIKWSAIAALIGGAFLRSMSLSYGVFSQIVVATAAVIVLVQAATMRRYLWMTLFLVVAWLFNPVFPVPFSSHLSNGVSTFAVFLFFFSLELLPPRHGLSIASITHRTPSSESL
Ga0335080_1088288623300032828SoilMLTKIIKWSAIAALIAGAFLRSLSPLGVRSQVLVASAAVVVLVQAATMQRYVQMTLFLLFACLFNPVFPAPFSNYVSNAVSTFGVFLFFFSLELQQPHPRLSIASIADRIPREAL
Ga0335070_10000300373300032829SoilMGGGFWYSVSSFRLLSQFVVAAAAAIVLTQAARMRRYIWMALFLLVACLFNPVVPIPFSSYIFGIVSAFAVLLFFFSVELLQPKRRLSIASITDRVPGSESL
Ga0335070_10002198243300032829SoilMASSYALLTRFVVVTSAAVVLTQAARMRRYVWMTLFLLVICLFNPVVPVPFSTYIFGLVSAFAVLLFFFSLELLRPKRRLSIASITDRMPGSESL
Ga0335070_1000657643300032829SoilMLTKIIKLGAIAALMAGGFWYSVSSFRLLSQFVVAAAAAIVLTQVARMRRYVWMTMFLLVACLFNPVVPIPFSSYIFGIVSAFAVLLFFFSLELLQPKRRLSIDSITDRMPGSESL
Ga0335069_100000082963300032893SoilMVGGFWYSVSSFRLVSGFVVAAAAAVVLTQAARMRRYVWMTMFLLVVCLFNPVIPIPLSSYIFGMVSALTVLLFFFSMELLQPKRRLSIESITDRMTRSESL
Ga0335069_1008282333300032893SoilMAGGFWYSVSSFRLLSQFVVAAAAAIVLTQVARMRRYVWMTMFLLVACLFNPVVPIPFSSYIFGIVSAFAVLLFFFSLELLQPKRRLSIDSITDRMPGSESL
Ga0335069_1015230523300032893SoilLLTKIIKWTAIAALMGGGFWYSVSSVRLLSQFVVAAAAAIVLTQAARMRRYVWMTLFLLVACVFNPVVSIGLPTHIFAVVSGFAALLFFFSVELLQPKRRLSIASITDGMPGSESL
Ga0335071_1098457123300032897SoilMLTKIIKVTAIVALMVGGFWYSVSSFRLVSGFVVAAAAAVVLTQAARMRRYVWMTMFLLVVCLFNPVIPIPLSSYIFGMVSALTVLLFFFSMELLQPKRRLSIESITDRMTRSESL
Ga0335077_1072433523300033158SoilMLTKTIKWTAIAALIGGILARSLPDLALILQFVVVVAAAIVFTQAANMRRYVWMTLFLVVACAFNPVLPVPFSNYILGIASTLAAVLFFLSLELLQPKPRMSIASITDRMPGSESL
Ga0326728_10002324523300033402Peat SoilLLTKIIKWSAIAALIGGGFLYSDYSYRLLSQFVVVAAAAVVLTQAAKMRRYIWMSLFLLVVCLFNPVVPVPFSSYIFGLVTIFAVILFFFSLELLRPKSRLSIASITDRMPGSESL
Ga0326726_1028918123300033433Peat SoilMLTKVIKCSAIAALIGGAFLRSAPDLALLLKFVVVAAAVIVLTQAAIMHRYVWMALFLVVVGLFNPVVPFPFSNYVFGIASCFALLLFFFSLELLRPKPRLSITSITDRMPGSQSL
Ga0370484_0067382_56_4063300034125Untreated Peat SoilMLAKVIKWSAMAALIGVALSRSLPRVGFALQFVVAAAAVVVLTQASKMARYVWMILFITAACLFNAVFPVPVSSYMSSVATTFAALLFFFSLELLKPEPSLVTGGIVDRTRGRKSL


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.