Scaffold Ga0335070_10000004

Overview

Basic Information

• Taxon OID: 3300032829
• Scaffold ID: Ga0335070_10000004
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 548315
• Total Scaffold Genes: 484
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 390 (80.58%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006028	Metagenome / Metatranscriptome	383	Y
F007930	Metagenome / Metatranscriptome	342	Y
F020961	Metagenome / Metatranscriptome	221	Y
F024595	Metagenome / Metatranscriptome	205	Y
F047787	Metagenome / Metatranscriptome	149	Y
F050739	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335070_10000004145	F050739	AGGAG	MSSPVVSERFRAVVCRHCGKPIRVPALVTRRESQFQEISDSSSAQYQLISRVFNVRCRCCERESVYSINQIVEFSHPAACPESNRTAAAV
Ga0335070_10000004235	F024595	GGAGG	LIRNCGLLSAALMLLCAASLLGDARVLFLPKLQSGETMQYEVHGHVDRIVKTESRVSSIRGPQQLQGDLSNLVRLSVQEVRTSKAQPWVAAQVELLPGPDTPNPRATTPRSRVAFEILDRGQLGGIHGLDALSPEERLVWQFWVARFAFGWTLPAEGMKPGEKWKYEEPELDAALIAGLVWEREVTYARDDKCPVLPGETCGVFLIQSTLRQKSSTKDSTPEEFHLHELKTSGSAHGENQVIAYISRKTGLVLRATEEVKQSMDVTVMKTEGTNGVHYDVDAKSHFETLFVPEPPASRTK
Ga0335070_10000004262	F007930	AGGAG	MFEPNLKDPDPQSNKTFPQKVFCMQHNREAQVVVATWPYSEEGWSDWRVIDCSILPPGAVHCGMDCLSQAKVQNE
Ga0335070_10000004263	F006028	GGAGG	MSDPEILDRILQTCSYRFRNLVCPNKERIANITAAKFEIEESDWSVIECSLQPNGEVKCGMTCLLHDFDEKE
Ga0335070_10000004320	F047787	N/A	MTSPALRCLRRLAIWVTLDLALFAGALALSTSADTTGQMRKPKTSGCYCNCAQSKTAGCIKMCELPKYASRWWAVSCAKPRAQSPAETPGAGPHYPHAPRAERASN
Ga0335070_10000004458	F020961	AGGAG	MNCEEFANLVPDLDALAKSPETMAAREHLRSCPACAAFYESSQRLRTELHDLGLATSEASAPSRVEMRLRQEFRTRHKTEKNHGRAVVAGWLLAAATLVLVAGSLFFWHSPRVNVASQQPTAKAPVASTVASEPELGGTLIAANDGDDEFALIPGALPGLQDETSVVRVQMQRGSLSALGLTVNEEHASDVVEVDLLLGADGQPQAYRLPQQTAN