NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335080_10000025

Scaffold Ga0335080_10000025


Overview

Basic Information
Taxon OID3300032828 Open in IMG/M
Scaffold IDGa0335080_10000025 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)175835
Total Scaffold Genes163 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)112 (68.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000822Metagenome / Metatranscriptome876Y
F016192Metagenome249Y
F050618Metagenome / Metatranscriptome145Y
F054290Metagenome / Metatranscriptome140Y
F081694Metagenome / Metatranscriptome114Y
F084998Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0335080_10000025106F054290N/AMRSALFGVGITAVFVSYQLLTGLDSPVSRNPALMLVFVVLCPPSLLSLAIDKEVGTNAFYVLWTVIALLNAALFATVRTLLARRAQRPD
Ga0335080_10000025115F081694GGAGGMFEDRDYFWVVLCKNHRFHHKGNLSYTHQIALAETDAYSPLPMLTQQVTVRCDSCGQEYSYWPKDILRNVIAVPMGFVPHPMFR
Ga0335080_10000025119F084998N/AMAKAAPKAKSAMDKLVDSFSDLVEDARQRMSPEEFRQAEKGFDKIVDRVKARASRDGRRETA
Ga0335080_10000025158F050618GGAGGMKRCKTHLVRVCLFLLASVPAYCQRGTFGIDVGESSDKYGALSSVNGLVFGIDGQITVLKANGKSGRPAVVAGGEIRLPSDTANHAKEYALFGGPRFQVRNLTIGFNVQVRKIVQPTTQVDNQFFSRYTLEMLETPIVFRYNMGASKKAFIELQGAPEFSPRFKSSSSALVLSHPNWDYGYFVRGSIGYTFGIWYAKANYETRYFKFNADPENPNGLNNWKSNAISGGVGFSF
Ga0335080_10000025159F016192AGGMKTLIVVAVVLCSVAAFGQAGAISSQVTVVQIPDHPQHANLTPLACEHPLVGGAPDAYVYAQGERPLWEFGPVSQPVPLGDVARAYRKARLTAKKAEIVLEKQGS
Ga0335080_1000002575F000822AGGAMKRPIFYCAVIVLALTSTFGQSARTFHGEISDSQCALNVHSLTRSHQEMLKSKSMGGTANTCAVYCVEHLGGYLVLSAGKNVYRLDRPDLVHGFEGNRVVVTGILDAKLNQIHVLKIDLEAKE

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