Scaffold Ga0335080

Basic Information
Taxon OID	3300032828 Open in IMG/M
Scaffold ID	Ga0335080_10000025 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032828 Open in IMG/M

Scaffold ID

Ga0335080_10000025 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	175835
Total Scaffold Genes	163 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	112 (68.71%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

175835

Total Scaffold Genes

163 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

112 (68.71%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000822	Metagenome / Metatranscriptome	876	Y
F016192	Metagenome	249	Y
F050618	Metagenome / Metatranscriptome	145	Y
F054290	Metagenome / Metatranscriptome	140	Y
F081694	Metagenome / Metatranscriptome	114	Y
F084998	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335080_10000025106	F054290	N/A	MRSALFGVGITAVFVSYQLLTGLDSPVSRNPALMLVFVVLCPPSLLSLAIDKEVGTNAFYVLWTVIALLNAALFATVRTLLARRAQRPD
Ga0335080_10000025115	F081694	GGAGG	MFEDRDYFWVVLCKNHRFHHKGNLSYTHQIALAETDAYSPLPMLTQQVTVRCDSCGQEYSYWPKDILRNVIAVPMGFVPHPMFR
Ga0335080_10000025119	F084998	N/A	MAKAAPKAKSAMDKLVDSFSDLVEDARQRMSPEEFRQAEKGFDKIVDRVKARASRDGRRETA
Ga0335080_10000025158	F050618	GGAGG	MKRCKTHLVRVCLFLLASVPAYCQRGTFGIDVGESSDKYGALSSVNGLVFGIDGQITVLKANGKSGRPAVVAGGEIRLPSDTANHAKEYALFGGPRFQVRNLTIGFNVQVRKIVQPTTQVDNQFFSRYTLEMLETPIVFRYNMGASKKAFIELQGAPEFSPRFKSSSSALVLSHPNWDYGYFVRGSIGYTFGIWYAKANYETRYFKFNADPENPNGLNNWKSNAISGGVGFSF
Ga0335080_10000025159	F016192	AGG	MKTLIVVAVVLCSVAAFGQAGAISSQVTVVQIPDHPQHANLTPLACEHPLVGGAPDAYVYAQGERPLWEFGPVSQPVPLGDVARAYRKARLTAKKAEIVLEKQGS
Ga0335080_1000002575	F000822	AGGA	MKRPIFYCAVIVLALTSTFGQSARTFHGEISDSQCALNVHSLTRSHQEMLKSKSMGGTANTCAVYCVEHLGGYLVLSAGKNVYRLDRPDLVHGFEGNRVVVTGILDAKLNQIHVLKIDLEAKE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335080_10000025

Overview

Ecosystem & Geography

Associated Families

Sequences