Basic Information | |
---|---|
Taxon OID | 3300032828 Open in IMG/M |
Scaffold ID | Ga0335080_10000025 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 175835 |
Total Scaffold Genes | 163 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 112 (68.71%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Florida | |||||||
Coordinates | Lat. (o) | 26.5065 | Long. (o) | -80.2537 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000822 | Metagenome / Metatranscriptome | 876 | Y |
F016192 | Metagenome | 249 | Y |
F050618 | Metagenome / Metatranscriptome | 145 | Y |
F054290 | Metagenome / Metatranscriptome | 140 | Y |
F081694 | Metagenome / Metatranscriptome | 114 | Y |
F084998 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335080_10000025106 | F054290 | N/A | MRSALFGVGITAVFVSYQLLTGLDSPVSRNPALMLVFVVLCPPSLLSLAIDKEVGTNAFYVLWTVIALLNAALFATVRTLLARRAQRPD |
Ga0335080_10000025115 | F081694 | GGAGG | MFEDRDYFWVVLCKNHRFHHKGNLSYTHQIALAETDAYSPLPMLTQQVTVRCDSCGQEYSYWPKDILRNVIAVPMGFVPHPMFR |
Ga0335080_10000025119 | F084998 | N/A | MAKAAPKAKSAMDKLVDSFSDLVEDARQRMSPEEFRQAEKGFDKIVDRVKARASRDGRRETA |
Ga0335080_10000025158 | F050618 | GGAGG | MKRCKTHLVRVCLFLLASVPAYCQRGTFGIDVGESSDKYGALSSVNGLVFGIDGQITVLKANGKSGRPAVVAGGEIRLPSDTANHAKEYALFGGPRFQVRNLTIGFNVQVRKIVQPTTQVDNQFFSRYTLEMLETPIVFRYNMGASKKAFIELQGAPEFSPRFKSSSSALVLSHPNWDYGYFVRGSIGYTFGIWYAKANYETRYFKFNADPENPNGLNNWKSNAISGGVGFSF |
Ga0335080_10000025159 | F016192 | AGG | MKTLIVVAVVLCSVAAFGQAGAISSQVTVVQIPDHPQHANLTPLACEHPLVGGAPDAYVYAQGERPLWEFGPVSQPVPLGDVARAYRKARLTAKKAEIVLEKQGS |
Ga0335080_1000002575 | F000822 | AGGA | MKRPIFYCAVIVLALTSTFGQSARTFHGEISDSQCALNVHSLTRSHQEMLKSKSMGGTANTCAVYCVEHLGGYLVLSAGKNVYRLDRPDLVHGFEGNRVVVTGILDAKLNQIHVLKIDLEAKE |
⦗Top⦘ |