Basic Information | |
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Taxon OID | 3300032820 Open in IMG/M |
Scaffold ID | Ga0310342_101573778 Open in IMG/M |
Source Dataset Name | Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 783 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean: North Pacific Subtropical Gyre | |||||||
Coordinates | Lat. (o) | 22.8644 | Long. (o) | -158.9436 | Alt. (m) | Depth (m) | 500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F034345 | Metagenome / Metatranscriptome | 175 | Y |
F072757 | Metagenome / Metatranscriptome | 121 | Y |
F087760 | Metagenome / Metatranscriptome | 110 | N |
Protein ID | Family | RBS | Sequence |
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Ga0310342_1015737781 | F072757 | N/A | ELDEVFGHTENSLVKIHMPTDDAYVMGKIPEVKAKVNLCIDRIKTQRYLCEESIAALEELKEELHKL |
Ga0310342_1015737782 | F087760 | AGGAG | MSQIEILKRNVRDLQEQLQNSHIRIKKLRAKLMQYEKLLNMLRKKP |
Ga0310342_1015737783 | F034345 | AGGA | MTEDEELLEFQNKLWKLIRETSPPDESKSDILMVSGALLSTCLKLYVETIGKESTIGMFNVAIESVKHTEDTRILH |
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