NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F072757

Metagenome / Metatranscriptome Family F072757

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F072757
Family Type Metagenome / Metatranscriptome
Number of Sequences 121
Average Sequence Length 59 residues
Representative Sequence MKNSLKKIHMPIDDAYIMGKIPQVKAKVNLCIDKVKTIRYLCEESIAGLEELKEELTKL
Number of Associated Samples 60
Number of Associated Scaffolds 121

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 87.60 %
% of genes near scaffold ends (potentially truncated) 18.18 %
% of genes from short scaffolds (< 2000 bps) 83.47 %
Associated GOLD sequencing projects 48
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (73.554 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(63.636 % of family members)
Environment Ontology (ENVO) Unclassified
(95.041 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(90.083 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 50.57%    β-sheet: 0.00%    Coil/Unstructured: 49.43%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.54
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 121 Family Scaffolds
PF00145DNA_methylase 4.96
PF06067DUF932 4.96
PF03889ArfA 2.48
PF07486Hydrolase_2 0.83
PF03237Terminase_6N 0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 121 Family Scaffolds
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 4.96
COG3036Stalled ribosome alternative rescue factor ArfATranslation, ribosomal structure and biogenesis [J] 2.48
COG3773Cell wall hydrolase CwlJ, involved in spore germinationCell cycle control, cell division, chromosome partitioning [D] 0.83


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A73.55 %
All OrganismsrootAll Organisms26.45 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001743|JGI24515J20084_1021276Not Available581Open in IMG/M
3300002511|JGI25131J35506_1001627All Organisms → Viruses → Predicted Viral3379Open in IMG/M
3300002511|JGI25131J35506_1005127All Organisms → Viruses → Predicted Viral1856Open in IMG/M
3300002511|JGI25131J35506_1007325Not Available1542Open in IMG/M
3300002511|JGI25131J35506_1012230All Organisms → Viruses → Predicted Viral1183Open in IMG/M
3300002511|JGI25131J35506_1014754Not Available1076Open in IMG/M
3300002511|JGI25131J35506_1018024Not Available971Open in IMG/M
3300002511|JGI25131J35506_1021079Not Available897Open in IMG/M
3300002511|JGI25131J35506_1059182Not Available532Open in IMG/M
3300002760|JGI25136J39404_1003466All Organisms → Viruses → Predicted Viral2618Open in IMG/M
3300002760|JGI25136J39404_1026835Not Available1051Open in IMG/M
3300002760|JGI25136J39404_1031010Not Available979Open in IMG/M
3300002760|JGI25136J39404_1032843All Organisms → cellular organisms → Bacteria953Open in IMG/M
3300002760|JGI25136J39404_1034295Not Available933Open in IMG/M
3300002760|JGI25136J39404_1034791Not Available927Open in IMG/M
3300002760|JGI25136J39404_1037078Not Available899Open in IMG/M
3300002760|JGI25136J39404_1046841Not Available801Open in IMG/M
3300002760|JGI25136J39404_1062479Not Available693Open in IMG/M
3300002760|JGI25136J39404_1076026Not Available628Open in IMG/M
3300006164|Ga0075441_10123618Not Available985Open in IMG/M
3300006164|Ga0075441_10176326Not Available801Open in IMG/M
3300006736|Ga0098033_1179192Not Available589Open in IMG/M
3300006753|Ga0098039_1020440All Organisms → Viruses → Predicted Viral2387Open in IMG/M
3300006753|Ga0098039_1090403All Organisms → Viruses → Predicted Viral1056Open in IMG/M
3300006754|Ga0098044_1371806Not Available540Open in IMG/M
3300006789|Ga0098054_1280267Not Available598Open in IMG/M
3300006926|Ga0098057_1106767Not Available683Open in IMG/M
3300006929|Ga0098036_1191655Not Available622Open in IMG/M
3300007758|Ga0105668_1165765Not Available609Open in IMG/M
3300007963|Ga0110931_1099061All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae → Calothrix → Calothrix elsteri → Calothrix elsteri CCALA 953879Open in IMG/M
3300007963|Ga0110931_1194470Not Available606Open in IMG/M
3300008050|Ga0098052_1276788Not Available637Open in IMG/M
3300008216|Ga0114898_1006935All Organisms → Viruses → Predicted Viral4763Open in IMG/M
3300008216|Ga0114898_1012531All Organisms → Viruses → Predicted Viral3180Open in IMG/M
3300008216|Ga0114898_1021215All Organisms → Viruses → Predicted Viral2261Open in IMG/M
3300008216|Ga0114898_1067531Not Available1109Open in IMG/M
3300008216|Ga0114898_1100958Not Available863Open in IMG/M
3300008216|Ga0114898_1131713Not Available729Open in IMG/M
3300008217|Ga0114899_1098496Not Available987Open in IMG/M
3300008217|Ga0114899_1115290Not Available895Open in IMG/M
3300008217|Ga0114899_1154586Not Available745Open in IMG/M
3300008220|Ga0114910_1108854Not Available819Open in IMG/M
3300008220|Ga0114910_1109428Not Available816Open in IMG/M
3300009173|Ga0114996_11013787Not Available589Open in IMG/M
3300009409|Ga0114993_10364364All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → unclassified Gimesia → Gimesia sp.1091Open in IMG/M
3300009413|Ga0114902_1023996All Organisms → Viruses → Predicted Viral1937Open in IMG/M
3300009414|Ga0114909_1066065Not Available1038Open in IMG/M
3300009418|Ga0114908_1088768Not Available1047Open in IMG/M
3300009602|Ga0114900_1141147Not Available630Open in IMG/M
3300009604|Ga0114901_1109188Not Available863Open in IMG/M
3300009604|Ga0114901_1111079Not Available853Open in IMG/M
3300009605|Ga0114906_1251563Not Available576Open in IMG/M
3300010153|Ga0098059_1265806Not Available659Open in IMG/M
3300010155|Ga0098047_10140396Not Available936Open in IMG/M
3300010155|Ga0098047_10206281Not Available752Open in IMG/M
3300010155|Ga0098047_10314393Not Available591Open in IMG/M
3300010883|Ga0133547_10540032All Organisms → Viruses → Predicted Viral2346Open in IMG/M
3300017775|Ga0181432_1109920Not Available827Open in IMG/M
3300017775|Ga0181432_1206462Not Available616Open in IMG/M
3300021791|Ga0226832_10004074Not Available4568Open in IMG/M
3300021791|Ga0226832_10542501Not Available506Open in IMG/M
(restricted) 3300024052|Ga0255050_10007251All Organisms → Viruses → Predicted Viral1875Open in IMG/M
(restricted) 3300024517|Ga0255049_10000901Not Available17213Open in IMG/M
(restricted) 3300024520|Ga0255047_10182960Not Available1069Open in IMG/M
3300025044|Ga0207891_1017147Not Available946Open in IMG/M
3300025046|Ga0207902_1000990All Organisms → Viruses → Predicted Viral2173Open in IMG/M
3300025046|Ga0207902_1003533All Organisms → Viruses → Predicted Viral1450Open in IMG/M
3300025046|Ga0207902_1017995Not Available817Open in IMG/M
3300025050|Ga0207892_1009045Not Available1035Open in IMG/M
3300025052|Ga0207906_1037492Not Available661Open in IMG/M
3300025069|Ga0207887_1018274Not Available1101Open in IMG/M
3300025069|Ga0207887_1021038All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1032Open in IMG/M
3300025069|Ga0207887_1038042Not Available780Open in IMG/M
3300025069|Ga0207887_1050615Not Available677Open in IMG/M
3300025078|Ga0208668_1090696Not Available536Open in IMG/M
3300025112|Ga0209349_1011906All Organisms → Viruses → Predicted Viral3323Open in IMG/M
3300025118|Ga0208790_1113695Not Available776Open in IMG/M
3300025122|Ga0209434_1101300Not Available824Open in IMG/M
3300025122|Ga0209434_1135771Not Available678Open in IMG/M
3300025125|Ga0209644_1000316All Organisms → cellular organisms → Bacteria9557Open in IMG/M
3300025125|Ga0209644_1001456All Organisms → Viruses → Predicted Viral4420Open in IMG/M
3300025125|Ga0209644_1009997Not Available1967Open in IMG/M
3300025125|Ga0209644_1015474All Organisms → Viruses → Predicted Viral1627Open in IMG/M
3300025125|Ga0209644_1018281Not Available1508Open in IMG/M
3300025125|Ga0209644_1028216Not Available1243Open in IMG/M
3300025125|Ga0209644_1031895All Organisms → Viruses → Predicted Viral1176Open in IMG/M
3300025125|Ga0209644_1054687Not Available916Open in IMG/M
3300025125|Ga0209644_1055294Not Available912Open in IMG/M
3300025125|Ga0209644_1066614Not Available836Open in IMG/M
3300025125|Ga0209644_1082483Not Available754Open in IMG/M
3300025125|Ga0209644_1088143Not Available730Open in IMG/M
3300025125|Ga0209644_1105454Not Available668Open in IMG/M
3300025133|Ga0208299_1114078Not Available894Open in IMG/M
3300025251|Ga0208182_1011610All Organisms → Viruses → Predicted Viral2433Open in IMG/M
3300025264|Ga0208029_1087772Not Available580Open in IMG/M
3300025267|Ga0208179_1010540All Organisms → Viruses → Predicted Viral2989Open in IMG/M
3300025267|Ga0208179_1015974All Organisms → Viruses → Predicted Viral2183Open in IMG/M
3300025274|Ga0208183_1102734Not Available521Open in IMG/M
3300025277|Ga0208180_1100917Not Available641Open in IMG/M
3300025873|Ga0209757_10003243All Organisms → Viruses → Predicted Viral4065Open in IMG/M
3300025873|Ga0209757_10013063All Organisms → Viruses → Predicted Viral2236Open in IMG/M
3300025873|Ga0209757_10018532All Organisms → Viruses → Predicted Viral1916Open in IMG/M
3300025873|Ga0209757_10037271Not Available1402Open in IMG/M
3300025873|Ga0209757_10037558All Organisms → Viruses → Predicted Viral1397Open in IMG/M
3300025873|Ga0209757_10040822Not Available1345Open in IMG/M
3300025873|Ga0209757_10064461Not Available1090Open in IMG/M
3300025873|Ga0209757_10078856Not Available992Open in IMG/M
3300025873|Ga0209757_10116921Not Available823Open in IMG/M
3300025873|Ga0209757_10209880Not Available617Open in IMG/M
3300026103|Ga0208451_1055197Not Available504Open in IMG/M
3300026117|Ga0208317_1010411Not Available566Open in IMG/M
3300027838|Ga0209089_10371254Not Available799Open in IMG/M
3300027847|Ga0209402_10637771Not Available596Open in IMG/M
3300028022|Ga0256382_1002132Not Available2769Open in IMG/M
3300028039|Ga0256380_1026214Not Available940Open in IMG/M
3300031801|Ga0310121_10063405All Organisms → Viruses → Predicted Viral2448Open in IMG/M
3300031803|Ga0310120_10171507All Organisms → Viruses → Predicted Viral1203Open in IMG/M
3300032820|Ga0310342_101573778Not Available783Open in IMG/M
3300033742|Ga0314858_040535Not Available1106Open in IMG/M
3300033742|Ga0314858_062134Not Available920Open in IMG/M
3300034629|Ga0326756_011590Not Available1004Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine63.64%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean19.83%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.48%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.65%
Marine OceanicEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic1.65%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine1.65%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.65%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater1.65%
Hydrothermal Vent FluidsEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids1.65%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.65%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.83%
Background SeawaterEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater0.83%
Filtered SeawaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater0.83%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001743Marine viral communities from the Pacific Ocean - LP-38EnvironmentalOpen in IMG/M
3300002511Marine viral communities from the Pacific Ocean - ETNP_2_1000EnvironmentalOpen in IMG/M
3300002760Marine viral communities from the Pacific Ocean - ETNP_6_1000EnvironmentalOpen in IMG/M
3300006164Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNAEnvironmentalOpen in IMG/M
3300006736Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaGEnvironmentalOpen in IMG/M
3300006753Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006926Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaGEnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300007758Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assemblyEnvironmentalOpen in IMG/M
3300007963Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)EnvironmentalOpen in IMG/M
3300008050Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaGEnvironmentalOpen in IMG/M
3300008216Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_GeostarEnvironmentalOpen in IMG/M
3300008217Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215EnvironmentalOpen in IMG/M
3300008220Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908EnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009413Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12EnvironmentalOpen in IMG/M
3300009414Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906EnvironmentalOpen in IMG/M
3300009418Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17EnvironmentalOpen in IMG/M
3300009602Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231EnvironmentalOpen in IMG/M
3300009604Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16EnvironmentalOpen in IMG/M
3300009605Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9EnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300010155Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaGEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300021791Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmerEnvironmentalOpen in IMG/M
3300024052 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_5EnvironmentalOpen in IMG/M
3300024517 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_3EnvironmentalOpen in IMG/M
3300024520 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1EnvironmentalOpen in IMG/M
3300025044Marine viral communities from the Pacific Ocean - LP-50 (SPAdes)EnvironmentalOpen in IMG/M
3300025046Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)EnvironmentalOpen in IMG/M
3300025050Marine viral communities from the Pacific Ocean - LP-54 (SPAdes)EnvironmentalOpen in IMG/M
3300025052Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)EnvironmentalOpen in IMG/M
3300025069Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)EnvironmentalOpen in IMG/M
3300025078Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025112Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)EnvironmentalOpen in IMG/M
3300025118Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025122Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)EnvironmentalOpen in IMG/M
3300025125Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300025133Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025251Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)EnvironmentalOpen in IMG/M
3300025264Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)EnvironmentalOpen in IMG/M
3300025267Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)EnvironmentalOpen in IMG/M
3300025274Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)EnvironmentalOpen in IMG/M
3300025277Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)EnvironmentalOpen in IMG/M
3300025873Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300026103Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155 (SPAdes)EnvironmentalOpen in IMG/M
3300026117Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500 (SPAdes)EnvironmentalOpen in IMG/M
3300027838Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)EnvironmentalOpen in IMG/M
3300027847Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)EnvironmentalOpen in IMG/M
3300028022Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750mEnvironmentalOpen in IMG/M
3300028039Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 2300mEnvironmentalOpen in IMG/M
3300031801Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986EnvironmentalOpen in IMG/M
3300031803Marine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983EnvironmentalOpen in IMG/M
3300032820Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MGEnvironmentalOpen in IMG/M
3300033742Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawaterEnvironmentalOpen in IMG/M
3300034629Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI24515J20084_102127623300001743MarineMKNSLKKIHMPIDDPYIMGKIPQAKVQVNLCIDKVKSIRYLVDESINQLEELKEELHKL*
JGI25131J35506_100162783300002511MarineMKKYTKKEYEEMVKLNMPVDDAYIMGRIPQVKDKVNLTIDKVKSIRYLCEESIASLEELKEELNKL*
JGI25131J35506_100512743300002511MarineMKNSLKKIHMPIDDAYIMGKIPQVKAKVNTCIDKVKTIRYLCEESIAQLEELKEELHKL*
JGI25131J35506_100732513300002511MarineMKNALKKIHMPIDDAYIMGKIPQVKAKVNLCIDRIKTQRYLCEESIAALEELKEELTKL*
JGI25131J35506_101223043300002511MarineMKNALKKIHMPINDPYIMGKIPELKAKVNATIDKIKTQRYLCEESIASLEELKEELTKL*
JGI25131J35506_101475423300002511MarineMKNSLKKIHMPIDDPYIMGKIPQVKAKVNLCIDKVKTIRYLCEESIAGLEELKEELTKL*
JGI25131J35506_101802433300002511MarineMKNSLKKIHMPIDDAYIMGKIPELKGKVNTCIDKVKTIRYLCEESIAQLEELKEAMTKL*
JGI25131J35506_102107923300002511MarineMKNALKKIHMPINDPYIMGKIPELKAKVNATIDKIKTQRYLCEESIAXLEELKEELHKL*
JGI25131J35506_105918233300002511MarineMKNSLKKIXMPIDDAYIMGKIPELKSKVNATIDKVKTIRYLCEESIAQLEELKEAMTKL*
JGI25136J39404_100346683300002760MarineMPENALKKIHMPIDDAYIMGKIPEVKAKVNLCIDKVKTIRYLCEESIAGLEELKEELTKL
JGI25136J39404_102683513300002760MarineMKNSLKKIHMPIDDPYIMGKIPQVKAKVNLCIDKVKTIRYLCEESIAALEELKEELHKL*
JGI25136J39404_103101033300002760MarineMKNALKKIHMPINDPYIMGKIPELKAKVNATIDKIKTQRYLCEESIAXLEELKEELTKL*
JGI25136J39404_103284333300002760MarineMKYSRKEYEKLDDAYVMGRIPQVKDKVNASIDKVKTIQYLCEESIVSLEELKEELNKL*
JGI25136J39404_103429543300002760MarineMKNSXKKIHMPVDDAYIMGKIPQAKAKVNTCIDKVKTIRYLCEESIAQLEELKEELHKL*
JGI25136J39404_103479113300002760MarineMAYTKKEYNKLVKLNMPADDAYIMGRIPQVKAQVNETIDKVKSILYWAEQSIDGLEDLKEELNKL*
JGI25136J39404_103707823300002760MarineMNDLVKMRMPIDDAYMMGKIPQVKAKVNLCIDKIKTQRYLCEEVIASLEELKEELNKL*
JGI25136J39404_104684133300002760MarineMKNSLKKIHMPVDDAYIMGKIPELKAKVNLCIDRVKTQRYLCEESIAALEELKEELHKL*
JGI25136J39404_106247913300002760MarineMKNSLKKIXMPXDDAYIMGKIPQAKAKVNTCIDKVKTIRYLCEESIAQLEELKEELHKL*
JGI25136J39404_107602613300002760MarineMKNSLKKIHMPIDDAYIMGKIPQVKAKVNLCIDRIKTQRYLCEESIAALEELKEELTKL*
Ga0075441_1012361833300006164MarineMKNSLIKIHMPIDDPYIMGKIPQAKVQVNLCIDKVKSIRYLCDESINQLEELKEELHKL*
Ga0075441_1017632643300006164MarineMKNALKKIHMPIDDAYIMGKIPQVKAKVNLCIDKVKTIRYLCEESIAGLEELKEELHKL*
Ga0098033_117919233300006736MarineMKNSLKKIHMPVDDAYIMGKIPELKSKVNATIDKVKTIRYLCEESIAKLEELKEEMTKL*
Ga0098039_102044013300006753MarineMKNSLKKIHMPVDDAYIMGKIPELKSKVNATIDKVKTIRYLCEESIAQLEELKEEMTKL*
Ga0098039_109040353300006753MarineMKNSLKKIHMPIDDAYIMGKIPQAKAKVNTCIDKVKTIRYLCEESIAALEELKEELHK
Ga0098044_137180623300006754MarineMKNDLVKMHMPINDPYIMGKIPQVKNKVNLCIDKVKTIRYLCEESIAQLEELKEELNKL*
Ga0098054_128026723300006789MarineMAYTKKEYDKLVKLNMPADDAYIMGRIPQVKDQINKSIDKVKTIRYLCEESIAQLEELKEELHKL*
Ga0098057_110676743300006926MarineVSMKNSLKKIHMPVDDAYIMGKIPQVKAKVNLCIDKVKTKRYLCEESIAALEELKEELHKL*
Ga0098036_119165513300006929MarinePIDDAYIMGKIPEVKAKVNLCIDRVKTQRYLCEESIAALEELKEELHKL*
Ga0105668_116576513300007758Background SeawaterKNSLVKIHMPIDDAYIMGKIPEAKAKVNLRIDKVKAIRYLCDESIAAMEELKEELTKL*
Ga0110931_109906143300007963MarineMKNALKKIHMPIDDAYIMGKIPQVKAKVNLCIDRIKTQRYLCEESIAALEELKEELHKL*
Ga0110931_119447013300007963MarineIHMPIDDAYIMGKIPQVKAKVNLCIDKVKTIRYLCEESIAALEELKEELHKL*
Ga0098052_127678823300008050MarineMSNDLVKMRMPIDDAYMMGKIPQVKAKVNLCIDKIKTQRYLCEEVMASLEELKEELNKL*
Ga0114898_1006935103300008216Deep OceanMKYSRKEYEKLDDAHVMGKIPQVKDKVNASIDKVKTIQYLCEESIVSLEELKEELNKL*
Ga0114898_101253173300008216Deep OceanMSNDLVKMHMPSEDAYMMGKIPKVKAQVNLCIDKVKTIRYLCEEVIASLEELKEELHKL*
Ga0114898_102121583300008216Deep OceanMKNDLVKMHMPIDDPYIMGKIPQVKNKVNLCIDKVKTIRYLCEESIAQLEELKEELHKL*
Ga0114898_106753153300008216Deep OceanMKNALKKIHMPIDDAYIMGKIPEVKAKVNLCIDKVKTIRYLCEESIAGLEELKEELTKL*
Ga0114898_110095823300008216Deep OceanMKNSLKKIHMPIDDAYIMGKIPQAKAKVNTCIDKVKTIRYLCEESIAALEELKEELHKL*
Ga0114898_113171333300008216Deep OceanMKNSLKKIHMPIDDAYIMGKIPQVKAKVNLCIDRIKTQRYLCEESIAALEELKEELHKL*
Ga0114899_109849623300008217Deep OceanMKNSLKKIHMPVDDAYIMGKIPQAKAKVNTCIDKVKTIRYLCEESIAQLEELKEELHKL*
Ga0114899_111529043300008217Deep OceanMKKKNDLVKLHMPINDPYIMGKIPQVKSKVNLCIDKVKTIRYLCEESIAQLEELKEELNKL*
Ga0114899_115458623300008217Deep OceanMKKKNDLVKLHMPINDPYIMGKIPQVKSKVNLCIDKVKTIRYLCEESIAQLEELKEELHKL*
Ga0114910_110885433300008220Deep OceanMKNSLKKIHMPIDDAYIMGKIPQVKAKVNLCIDRIKTQRYLCEESIAQLEELKEELHKL*
Ga0114910_110942833300008220Deep OceanMKKKNDLVKLHMPINDPYIMGKIPQVKRKVNLCIDKVKTIRYLCEESIAQLEELKEELNKL*
Ga0114996_1101378713300009173MarineMSDKNSLIKIHSPIDDAYIMGKIPEAKAKVNLCIDKVKAIRYLCDESINQLEELKEELNKL*
Ga0114993_1036436443300009409MarineMSDKNSLIKIHSPIDDAYIMGKIPEVKAKVNLCIDKVKAIRYLCDESIAGLEELKEELHKL*
Ga0114902_102399643300009413Deep OceanMSNDLVKMHMPSEDAYMMGKIPKVKAQVNLCIDKVKTIRYLCEKVIASLEELKEELHKL*
Ga0114909_106606553300009414Deep OceanMKKKNDLVKLHMPINDPYIMGKIPQVKNKVNLCIDKVKTIRYLCEESIAQLEELKEELHKL*
Ga0114908_108876853300009418Deep OceanVKLHMPINDPYIMGKIPQVKSKVNLCIDKVKTIRYLCEESIAQLEELKEELHKL*
Ga0114900_114114743300009602Deep OceanMSNDLVKMHMPSEDAYMMGKIPKVKAQVNLCIQKVKTIRYLCEEVIASLEELKEELH
Ga0114901_110918843300009604Deep OceanMNDLVKMHMPINDTYIMGKIPKVKAKVNLTIDQVKNIHYLCEEVINSLEELKEELHKL*
Ga0114901_111107923300009604Deep OceanMKKYSKKEYDRLVKLKMPADDAYVMGRMPKVKDKVNSTIDKVKSIQYLCEESIASLEELKEELDKL*
Ga0114906_125156313300009605Deep OceanMKNSLKKIHMPVDDAYIMGKIPQAKAKVNTCIDKVKTIRYLCEKNITELEELRDDKIKATQHGRVGVIID
Ga0098059_126580623300010153MarineMKNSLKKIHMPVDDAYIMGKIPQVKAKVNLCIDKVKTIRYLCEESIASLEELKEELHKL*
Ga0098047_1014039623300010155MarineMKNALKKIHMPIDDAYIMGKIPQVKAKVNLCIDRVKTQRYLCEESIAALEELKEELHKL*
Ga0098047_1020628113300010155MarineMKNSLKKIHMPVDDAYIMGKIPELKGKVNATIDKVKTIRYLCEESIAKLEELKEEMTKL*
Ga0098047_1031439323300010155MarineMKNSLKKIHMPIDDAYIMGKIPELKSKVNATIDKVKTIRYLCEESIAQLEELKEEMTKL*
Ga0133547_1054003213300010883MarineNCFKCEACSMSDKNSLIKIHSPIDDAYIMGKIPEVKAKVNLCIDKVKAIRYLCDESIAGLEELKEELHKL*
Ga0181432_110992043300017775SeawaterMKNSLKKIHMPIDDAYIMGKIPELKGKVNTCIDKVKTIRYLCEESIAQLEELKEAMTKL
Ga0181432_120646223300017775SeawaterMKDDLVKMHMPINDPYIMGKIPQVKNKVNLCINKVKTIRYLCEESIAQLEELKEELHKL
Ga0226832_1000407423300021791Hydrothermal Vent FluidsMKNALKKIHMPIDDAYIMGKIPEVKAKVNLCIDKVKTIRYLCEESIAGLEELKEELTKL
Ga0226832_1054250123300021791Hydrothermal Vent FluidsMKNSLKKIHMPVDDAYIMGKIPQVKAKVNLCIDRIKTQRYLCEESIAALEELKEEMTKL
(restricted) Ga0255050_1000725143300024052SeawaterMKNSLKKIHMPIDDAYIMGKIPEVKAKVSLCIDRVKTIRYLCEESIAGLEELKEELAKL
(restricted) Ga0255049_10000901143300024517SeawaterMPIDDAYIMGKIPEVKAKVSLCIDRVKTIRYLCEESIAGLEELKEELAKL
(restricted) Ga0255047_1018296023300024520SeawaterMKNSLKKIHMPVDDAYIMGKIPQAKAKVNTCIDKVKTIRYLCEESIAQLEELKEELHKL
Ga0207891_101714733300025044MarineMKNSLIKIHMPIDDPYIMGKIPEAKVKVNTCIDKVKSIRYLVDESINQLEELKEELHKL
Ga0207902_100099073300025046MarineMKNSLIKIHMPIDDPYIMGKIPQAKVQVNLCIDKVKSIRYLCDESINQLEELKEELHKL
Ga0207902_100353353300025046MarineMKNSLVKIHMPIDDAYIMGKIPEVKAKVNLCIDKVKTIRYLCEESIAGLEELKEELHKL
Ga0207902_101799513300025046MarineSLGLSNCFKCEACSMKNKNSLVKIHMPIDDAYIMGKIPEAKAKVNLCIDKVKAIRYLCDESIAAMEELKEELTKL
Ga0207892_100904553300025050MarineMKNKNSLVKIHMPIDDAYIMGKIPEAKAKVNLCIDKVKTIRYLCEESIAGLEELKEELHK
Ga0207906_103749223300025052MarineMKNSLKKIHMPIDDPYIMGKIPQVKAKVNLCIDKVKTIRYLCEESIAGLEELKEELHKL
Ga0207887_101827443300025069MarineMKNSLKKIHMPIDDAYIMGKIPQVKAKVNLCIDKVKTIRYLCEESIAGLEELKEELTKL
Ga0207887_102103813300025069MarineMKNALKKIHMPIDDAYIMGKIPQVKAKVNLCIDRIKTQRYLCEESIAALEELKEELHKL
Ga0207887_103804233300025069MarineMKNSLKKIHMPIDDPYIMGKIPQAKVQVNLCIDKVKSIRYLVDESINQLEELKEELHKL
Ga0207887_105061513300025069MarineMKNALKKIHMPINDPYIMGKIPELKAKVNATIDKIKTQRYLCEESIASLEELKEELHKL
Ga0208668_109069613300025078MarineMKNSLKKIHMPVDDAYIMGKIPQVKAKVNLCIDRIKTQRYLCEESIAALEELKE
Ga0209349_101190663300025112MarineMPENALKKIHMPIDDAYIMGKIPEVKAQVNLCIDRVKTIRYLCEESIAGLEELKEELTKL
Ga0208790_111369513300025118MarinePIDDAYIMGKIPEVKAKVNLCIDRVKTQRYLCEESIAALEELKEELHKL
Ga0209434_110130033300025122MarineMKNSLKKIHMPVDDAYIMGKIPELKSKVNATIDKVKTIRYLCEESIAKLEELKEEMTKL
Ga0209434_113577123300025122MarineMKNSLKKIHMPIDDAYIMGKIPQVKAKVNLCIDRIKTQRYLCEESIAALEELKEELTKL
Ga0209644_1000316173300025125MarineMKKYTKKEYEEMVKLNMPVDDAYIMGRIPQVKDKVNLTIDKVKSIRYLCEESIASLEELKEELNKL
Ga0209644_1001456173300025125MarineMKKKNDLVKLHMPINDPYIMGKIPQVKSKVNLCIDKVKTIRYLCEESIAQLEELKEELHK
Ga0209644_100999753300025125MarineMKNSLKKIHMPIDDPYIMGKIPQVKAKVNLCIDKVKTIRYLCEESIAGLEELKEELTKL
Ga0209644_101547473300025125MarineMNDLVKLHMPGEDAYVMDKIPQVKDKVNSCINKVKTIHYLCEESIASLEELKEELNKL
Ga0209644_101828163300025125MarineMKNALKKIHMPIDDAYIMGKIPQVKAKVNLCIDRIKTQRYLCEESIAALEELKEELTKL
Ga0209644_102821643300025125MarineMNDLVKMRMPIDDAYMMGKIPQVKAKVNLCIDKIKTQRYLCEEVMASLEELKEELNKL
Ga0209644_103189553300025125MarineMKNSLKKIHMPIDDAYIMGKIPQVKAKVNTCIDKVKTIRYLCEESIAQLEELKEELHKL
Ga0209644_105468733300025125MarineMVYTKKEYDKLVKLNMPADDAYVMGRIPQVKDKVNSTIDKVKSIQYLCEESIASLEELKEELDKL
Ga0209644_105529423300025125MarineMAYTKKEYDKLVKLNMPIDDAYIMGRIPQVKAQVNETIDKVKSILYWAEQSIDGLEDLKEELNKL
Ga0209644_106661423300025125MarineMKNSLKKIHMPIDDAYIMGKIPELKSKVNATIDKVKTIRYLCEESIAQLEELKEAMTKL
Ga0209644_108248333300025125MarineMKNSLIKIHMPIDDPYIMGKIPQAKVQVNLCIDKVKSIRYLVDESINQLEELKEELHKL
Ga0209644_108814313300025125MarineMKNSLKKIHMPIDDAYIMGKIPELKGKVNTCIDKVKTIRYLCEESIAQLEELKEAM
Ga0209644_110545423300025125MarineMKNSLKKIHMPVDDAYIMGKIPELKAKVNLCIDRVKTQRYLCEESIAALEELKEELHKL
Ga0208299_111407843300025133MarineMKYSKKEYEKMPSDDAYVMGRIPQVKDKVNASIDKVKTIQYLCEESIVSLEELKEELNKL
Ga0208182_101161033300025251Deep OceanMKNSLKKIHMPIDDAYIMGKIPQVKAKVNLCIDRIKTQRYLCEESIAALEELKEELHKL
Ga0208029_108777223300025264Deep OceanMKNSLKKIHMPIDDAYIMGKIPQAKAKVNTCIDKVKTIRYLCEESIAALEELKEELHKL
Ga0208179_101054083300025267Deep OceanMSNDLVKMHMPSEDAYMMGKIPKVKAQVNLCIDKVKTIRYLCEEVIASLEELKEELHKL
Ga0208179_101597453300025267Deep OceanMKNDLVKMHMPIDDPYIMGKIPQVKNKVNLCIDKVKTIRYLCEESIAQLEELKEELHKL
Ga0208183_110273413300025274Deep OceanMKKKNDLVKLHMPINDPYIMGKIPQVKSKVNLCIDKVKTIRYLCEESIAQLE
Ga0208180_110091713300025277Deep OceanMNDLVKMHMPINDAYIMGKIPKVKAKVNLTIDQVKNIHYLCEEVINSLEELKEELHKL
Ga0209757_1000324373300025873MarineMAYTKKEYNKLVKLNMPADDAYIMGRIPQVKAQVNETIDKVKSILYWAEQSIDGLEDLKEELNKL
Ga0209757_1001306353300025873MarineMVYTKKEYDKLVKLNMPADDAYIMGRIPQVKDKVNSTIDKVKSIQYLCEESIASLEELKEELDKL
Ga0209757_1001853233300025873MarineMKNALKKIHMPINDPYIMGKIPELKAKVNATIDKIKTQRYLCEESIASLEELKEELTKL
Ga0209757_1003727153300025873MarineMKNDLVKMHMPGDDSYVMDKIPQVKDKVNSCIDKIKTMQYLAEESIASLEELKEELNNL
Ga0209757_1003755813300025873MarineYQDREGSMKKENDLVKMHMPINDPYIMGRIPQVKDKVNLTIDKVKTIRYLCEESIASLEELKEELNKL
Ga0209757_1004082253300025873MarineMNDLVKMRMPIDDAYMMGKIPQVKAKVNLCIDKIKTQRYLCEEVIASLEELKEELNKL
Ga0209757_1006446123300025873MarineMKNSLKKIHMPIDDPYIMGKIPQVKAKVNLCIDKVKTIRYLCEESIAALEELKEELHKL
Ga0209757_1007885653300025873MarineMKNALKKIHMPIDDPYIMGKIPEAKVKVNTCIDKVKSIRYLVDESINQLEELKEELHKL
Ga0209757_1011692123300025873MarineMNDLVKLHMPGEDAYVMDKIPSCINKVKTIHYLCEESIASLEELKEELNKL
Ga0209757_1020988013300025873MarineTSLGLSYCFKCEIGSMKNSLKKIHMPIDDAYIMGKIPQVKAKVNLCIDRIKTQRYLCEESIAALEELKEELHKL
Ga0208451_105519723300026103Marine OceanicMSDKNSLIKIHSPIDDAYIMGKIPEVKAKVNLCIDKVKAIRYLCDESIAGLEELK
Ga0208317_101041113300026117Marine OceanicMKNSLVKIHMPIDDAYIMGKIPEAKAKVNTCIDKVKAIRYLCDESIAALEELKEELTKL
Ga0209089_1037125443300027838MarineMSDKNSLIKIHSPIDDAYIMGKIPEAKVKVNTCIDKVKAMRYLCDESINQLEELKEELNK
Ga0209402_1063777133300027847MarineMKNKNSLIKIHSPIDDAYIMGKIPEAKGKVNACIDKVKAMRYLCDESINQQEELKEELNK
Ga0256382_100213273300028022SeawaterMKYSRKEYEKLDDAHVMGKIPQVKDKVNASIDKVKTIQYLCEESIVSLEELKEELNKL
Ga0256380_102621443300028039SeawaterMKNSLKKIHMPIDDAYIMGKIPELKSKVNATIDKVKTQRYLCEESIAKLEELRDDKILPP
Ga0310121_1006340583300031801MarineMSDKNSLIKIHSPIDDAYIMGKIPEVKAKVNLCIDKVKAIRYLCDESIAGLEELKEELHK
Ga0310120_1017150753300031803MarineMSDKNSLIKIHSPIDDAYIMGKIPEVKAKVNLCIDKVKAIRYLCDESIAGLE
Ga0310342_10157377813300032820SeawaterELDEVFGHTENSLVKIHMPTDDAYVMGKIPEVKAKVNLCIDRIKTQRYLCEESIAALEELKEELHKL
Ga0314858_040535_191_3703300033742Sea-Ice BrineMKNALKKIHMPIDDPHIMGKIPQAKVQVNLCIDKVKSMRYLCDESINQLEELKEELHKL
Ga0314858_062134_39_2243300033742Sea-Ice BrineMKNKNSLIKIHSPIDDAYIMGKIPEAKVKVNTCIDKVKSIRYLVDESINQLEELKEELHK
Ga0326756_011590_837_10043300034629Filtered SeawaterLVKIHMPIDDAYIMGKIPEAKAKVNLTIDKVKTIRYLCEESIAGLEELKEELTKL


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.