Scaffold Ga0335078_10000059

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10000059
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 207112
• Total Scaffold Genes: 179
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 127 (70.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000238	Metagenome / Metatranscriptome	1494	Y
F001209	Metagenome / Metatranscriptome	747	Y
F016864	Metagenome / Metatranscriptome	244	Y
F040248	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_10000059161	F000238	GAG	MKPRRPSHSPRWYGVPLRVFLVTFIGTLLCLAVFLLFAILGTVILAAMHGVHPDMRVAYRYVAFPLAAIAGIVIFIVTLVSEIRHYRQSKTLTAIERMS
Ga0335078_10000059176	F001209	AGGA	MQSPDVLVANEGTIFLFNPLTTKAQDWITENVQDAIWFGTTLVVEHRFALGLAAGMSQDGLVLR
Ga0335078_1000005982	F016864	GGAG	MKSFIITAFAVLALTGVSAAKDPLPEAPSAVMEAAPFIVETPAPTPMAKVTETKTVDTKFLSLAIISTGSTFADSYTTLFARENWLAGKKGVCNMEVESAYLYGTHPTVGRAYAVASVKSVGSIFASYYLRKHHSKFWSLPLVANSVMSLQGVTQNMSSCN
Ga0335078_1000005997	F040248	AGG	MATNDQSVDNPRTPIAKKPYEKPSFRYEEVFVTTALTCGKMTGSTQGTCSLNPKAS