Scaffold Ga0335078

Basic Information
Taxon OID	3300032805 Open in IMG/M
Scaffold ID	Ga0335078_10000015 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032805 Open in IMG/M

Scaffold ID

Ga0335078_10000015 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	339243
Total Scaffold Genes	397 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	248 (62.47%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

339243

Total Scaffold Genes

397 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

248 (62.47%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038372	Metagenome / Metatranscriptome	166	Y
F043341	Metagenome	156	Y
F049456	Metagenome / Metatranscriptome	146	Y
F077154	Metagenome / Metatranscriptome	117	Y
F083790	Metagenome / Metatranscriptome	112	Y
F102744	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_10000015131	F043341	GGA	VESSGSGACRTADYNPVVLRVAVPLLIVFALLVAGCGGSTVYSDAKTSACLQARGAKISPPGSSDLVASTAPGGAFAAALGDNSVKLVFGQTDAQAQNLVAAYERFAFPNVRAGLPDVLRRYNNVVTLWHEHPQDADLSLVIGCLR
Ga0335078_10000015187	F102744	GAGG	MGAVSRPLLVTVAVLAAAAAAVPAAQASTRYTIVLMSYTTVTQTHDTAPKGKANKGDSIDFKDLLLTTSNNELGKKKNKPVGYDAGTVLYTSATASKIEGVTTFPQIGTLTFEGPMVTRKDGTVHVAVIKGTGAFKGAKGTLIIGTGNQKAPNTYRLVLPQVPCTSHCD
Ga0335078_10000015199	F038372	GAG	MPRKLMSAFMLAIGSFAGSLVYRRRMARRVERVDLYSDDGSMASIAAGSPEAERLLTLARELVSLAR
Ga0335078_10000015233	F077154	GGAG	MEISQAVTAEDLDLTPVFGELDDDTKARVLEELRRAEAALARIRDELELEGEALTLQRYPSGQTEVSSSLKGAAGKLTFEVGLRPRNFFSESPWQPGRPARTMVTDAWDVDGAVKVMVRRPLGKHKYTIEETPEEIEEQRYESAADAAAALAAVADRIAELARSREPTIDAWAPPEPAT
Ga0335078_10000015282	F049456	GGCGG	MRENSVWVPPSATSFSCLCEACLELARDDGSTFVEAVRRATVRGPLPAETAVGFARCDAGHEVVVRRVDRPPSLARRDGRQLELV
Ga0335078_10000015391	F083790	AGG	VYERFDETDVHADYLQLLRRGSVMRRLAQAQHSAWRHAMRTKARADDLRIRTWSRDTTPAEVWAVLPDWSLTRDERERLARRLEWLRED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335078_10000015

Overview

Ecosystem & Geography

Associated Families

Sequences