Scaffold Ga0335078_10000001

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10000001
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1101837
• Total Scaffold Genes: 888
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 615 (69.26%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000132	Metagenome / Metatranscriptome	1972	Y
F000228	Metagenome / Metatranscriptome	1519	Y
F000515	Metagenome / Metatranscriptome	1062	Y
F000668	Metagenome / Metatranscriptome	948	Y
F000867	Metagenome / Metatranscriptome	854	Y
F001520	Metagenome / Metatranscriptome	679	Y
F003445	Metagenome / Metatranscriptome	486	Y
F004185	Metagenome / Metatranscriptome	449	Y
F006809	Metagenome / Metatranscriptome	364	Y
F011054	Metagenome / Metatranscriptome	296	Y
F019183	Metagenome	231	Y
F077630	Metagenome / Metatranscriptome	117	Y
F095972	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_10000001154	F000515	N/A	MTQFPQPHPSRRAARVQLGDSVLAAIRLEDGRRTKAKLQTISVTGGLLRLSHSLGQGDFVEVAFQTQSGPVHGMAEVLSPMQKTTDGVLQPFRFVAIEDDDHRRLRTSLEHVAARNSLGMKSSVFSTY
Ga0335078_10000001211	F095972	AGGAGG	MKFKQLRQIVDEMHRGYPEIDDAEVKINIGHSVVGFDEISHFIKEDTVVLFPIRERPTGPWRSSFGQAYSRRV
Ga0335078_10000001212	F003445	GGAGG	MAFPNDEPTVQHGDATIQLIDLLVARLEECLGEVLPLETDDLLKDYAKGARNHVASAVEQLTLARARKEQQLGGRSK
Ga0335078_10000001288	F077630	GGAGG	LAQKDVPGKVVDFPAQQHHSLNLAAEHIVDSDRELVVVTFARKLTAFDIERYARLLRANPSFRPSFSEIVDLREVEELDLKASDFLKLADQVDPFSFDAKRAFVVRTSVQNHAARMHKVLRSQRNIEIFHSMEDAERWVYT
Ga0335078_10000001360	F000668	GGA	MGTVKAIVGFLAIIAVVYCGFQIIPPELSNYSFQDDLRNIAMVGGANPHESDQELLDAVMKKAQEHQIALTPDRVTVQRIGTPGALGVYVAVDYTVPVSLPGYSLTLHFTPSSGNKGM
Ga0335078_10000001368	F000867	N/A	MARKSILLIFTLFTLACSPRDYLTRRLAFDLISASDAFKTPQQYVLQTGVVSNKDYLSPEYLVLEHHGWLSAATAPCPAGLAPPPCWDILLTPSGVDTVRSIVPAEEADKRSFAIPVARRELLSITGISKQGYAADVDFTWRWVPLNEIGAALYSSDLRSASTVSFRDYDDGWRLVAHAPHSGQTLDDSLKNAEPAP
Ga0335078_10000001419	F019183	AGGA	MDEGRKRVLLIAASILAVRKLANWDGRPSPFLESTIADAITIAERIMARIDSRWPTRNTG
Ga0335078_10000001433	F004185	GGAGG	MSLSKSYVRDSNRKIIGSVTTGFTGAFDTIVRDEDGHTLGWSSEKFQTTRDEHGHLVSINTADPGLLIGRHKQR
Ga0335078_10000001490	F000228	GAG	MLLVPCSCGTTFAVAQDYDRQGTTWSRYLVCPGCGKRHDPKNRLLQMGFQNEGYWKVDDC
Ga0335078_10000001511	F000036	N/A	MAYKEIFWMACDSTEQLRAEYGPFHTRGEAESEARKLGFGYLLRYEHLLGENEEIEEVRCIFIELPGAVPVTTEAVQVTLHTRCATCGEAAVHETGWQAEVWADIHEFEHSRHRVRLFEHARGRGLKEIGDWRG
Ga0335078_10000001529	F001520	GGAG	VNSIKYLFAAYIATWVIHSFYLGTIVRRFSRLRRELKELGKK
Ga0335078_10000001579	F011054	GAGG	MYTGTLIRDLTAAVERAEQKVEQQRVAEAEELRAIFAMQIPVVDDDRIFMGAA
Ga0335078_10000001648	F000132	GGTGG	MIDKLAAGVVQVETPIGPRYVIPSLLQRMYLLWMFRNFPILPHAVLSRRQQRLIDRLCTDQRFASMIYTDTMDEAPVIGIIEHRPPVGAGSLPPKRPAASDTPQGLAAEIRQRS
Ga0335078_10000001795	F006809	N/A	MPVILFATVIASVSFGVLAAYAVVFGILSTFGRSAQRQVQPQPQRARLVLVPTQNHASGD